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CNPY3 (canopy FGF signaling regulator 3)

Identity

Alias_namesTNRC5
trinucleotide repeat containing 5
canopy 3 homolog (zebrafish)
Alias_symbol (synonym)CAG4A
Other aliasERDA5
PRAT4A
HGNC (Hugo) CNPY3
LocusID (NCBI) 10695
Atlas_Id 61953
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42929130 and ends at 42939287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNPY3 (6p21.1) / CNPY3 (6p21.1)CNPY3 (6p21.1) / CXCR5 (11q23.3)CNPY3 (6p21.1) / RBCK1 (20p13)
CNPY3 (6p21.1) / TPO (2p25.3)TGFBI (5q31.1) / CNPY3 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(2;6)(p25;p21) CNPY3/TPO
t(6;11)(p21;q23) CNPY3/CXCR5


External links

Nomenclature
HGNC (Hugo)CNPY3   11968
Cards
Entrez_Gene (NCBI)CNPY3  10695  canopy FGF signaling regulator 3
AliasesCAG4A; ERDA5; PRAT4A; TNRC5
GeneCards (Weizmann)CNPY3
Ensembl hg19 (Hinxton)ENSG00000137161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137161 [Gene_View]  ENSG00000137161 [Sequence]  chr6:42929130-42939287 [Contig_View]  CNPY3 [Vega]
ICGC DataPortalENSG00000137161
TCGA cBioPortalCNPY3
AceView (NCBI)CNPY3
Genatlas (Paris)CNPY3
WikiGenes10695
SOURCE (Princeton)CNPY3
Genetics Home Reference (NIH)CNPY3
Genomic and cartography
GoldenPath hg38 (UCSC)CNPY3  -     chr6:42929130-42939287 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPY3  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblCNPY3 - 6p21.1 [CytoView hg19]  CNPY3 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBICNPY3 [Mapview hg19]  CNPY3 [Mapview hg38]
OMIM610774   
Gene and transcription
Genbank (Entrez)AF161347 AI202110 AK090425 AK124196 AY358960
RefSeq transcript (Entrez)NM_001318842 NM_001318845 NM_001318847 NM_001318848 NM_006586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNPY3
Cluster EST : UnigeneHs.414099 [ NCBI ]
CGAP (NCI)Hs.414099
Alternative Splicing GalleryENSG00000137161
Gene ExpressionCNPY3 [ NCBI-GEO ]   CNPY3 [ EBI - ARRAY_EXPRESS ]   CNPY3 [ SEEK ]   CNPY3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPY3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10695
GTEX Portal (Tissue expression)CNPY3
Human Protein AtlasENSG00000137161-CNPY3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT09
Splice isoforms : SwissVarQ9BT09
PhosPhoSitePlusQ9BT09
Domains : Interpro (EBI)DUF3456   
Domain families : Pfam (Sanger)DUF3456 (PF11938)   
Domain families : Pfam (NCBI)pfam11938   
Conserved Domain (NCBI)CNPY3
DMDM Disease mutations10695
Blocks (Seattle)CNPY3
SuperfamilyQ9BT09
Human Protein Atlas [tissue]ENSG00000137161-CNPY3 [tissue]
Peptide AtlasQ9BT09
HPRD06745
IPIIPI00551062   IPI00398366   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT09
IntAct (EBI)Q9BT09
FunCoupENSG00000137161
BioGRIDCNPY3
STRING (EMBL)CNPY3
ZODIACCNPY3
Ontologies - Pathways
QuickGOQ9BT09
Ontology : AmiGOtoll-like receptor signaling pathway  receptor binding  endoplasmic reticulum lumen  innate immune response  
Ontology : EGO-EBItoll-like receptor signaling pathway  receptor binding  endoplasmic reticulum lumen  innate immune response  
NDEx NetworkCNPY3
Atlas of Cancer Signalling NetworkCNPY3
Wikipedia pathwaysCNPY3
Orthology - Evolution
OrthoDB10695
GeneTree (enSembl)ENSG00000137161
Phylogenetic Trees/Animal Genes : TreeFamCNPY3
HOVERGENQ9BT09
HOGENOMQ9BT09
Homologs : HomoloGeneCNPY3
Homology/Alignments : Family Browser (UCSC)CNPY3
Gene fusions - Rearrangements
Fusion : QuiverCNPY3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPY3
dbVarCNPY3
ClinVarCNPY3
1000_GenomesCNPY3 
Exome Variant ServerCNPY3
ExAC (Exome Aggregation Consortium)ENSG00000137161
GNOMAD BrowserENSG00000137161
Varsome BrowserCNPY3
Genetic variants : HAPMAP10695
Genomic Variants (DGV)CNPY3 [DGVbeta]
DECIPHERCNPY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPY3 
Mutations
ICGC Data PortalCNPY3 
TCGA Data PortalCNPY3 
Broad Tumor PortalCNPY3
OASIS PortalCNPY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPY3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNPY3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNPY3
DgiDB (Drug Gene Interaction Database)CNPY3
DoCM (Curated mutations)CNPY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNPY3 (select a term)
intoGenCNPY3
Cancer3DCNPY3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610774   
Orphanet
DisGeNETCNPY3
MedgenCNPY3
Genetic Testing Registry CNPY3
NextProtQ9BT09 [Medical]
TSGene10695
GENETestsCNPY3
Target ValidationCNPY3
Huge Navigator CNPY3 [HugePedia]
snp3D : Map Gene to Disease10695
BioCentury BCIQCNPY3
ClinGenCNPY3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10695
Chemical/Pharm GKB GenePA162382601
Clinical trialCNPY3
Miscellaneous
canSAR (ICR)CNPY3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNPY3
EVEXCNPY3
GoPubMedCNPY3
iHOPCNPY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:41:01 CEST 2018

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