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CNPY3 (canopy FGF signaling regulator 3)

Identity

Alias (NCBI)CAG4A
DEE60
EIEE60
ERDA5
PRAT4A
TNRC5
HGNC (Hugo) CNPY3
HGNC Alias symbCAG4A
HGNC Previous nameTNRC5
HGNC Previous nametrinucleotide repeat containing 5
 canopy 3 homolog (zebrafish)
LocusID (NCBI) 10695
Atlas_Id 61953
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42929480 and ends at 42939294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNPY3 (6p21.1) / CNPY3 (6p21.1)CNPY3 (6p21.1) / CXCR5 (11q23.3)CNPY3 (6p21.1) / RBCK1 (20p13)
CNPY3 (6p21.1) / TPO (2p25.3)TGFBI (5q31.1) / CNPY3 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CNPY3   11968
Cards
Entrez_Gene (NCBI)CNPY3    canopy FGF signaling regulator 3
AliasesCAG4A; DEE60; EIEE60; ERDA5; 
PRAT4A; TNRC5
GeneCards (Weizmann)CNPY3
Ensembl hg19 (Hinxton)ENSG00000137161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137161 [Gene_View]  ENSG00000137161 [Sequence]  chr6:42929480-42939294 [Contig_View]  CNPY3 [Vega]
ICGC DataPortalENSG00000137161
TCGA cBioPortalCNPY3
AceView (NCBI)CNPY3
Genatlas (Paris)CNPY3
SOURCE (Princeton)CNPY3
Genetics Home Reference (NIH)CNPY3
Genomic and cartography
GoldenPath hg38 (UCSC)CNPY3  -     chr6:42929480-42939294 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPY3  -     6p21.1   [Description]    (hg19-Feb_2009)
GoldenPathCNPY3 - 6p21.1 [CytoView hg19]  CNPY3 - 6p21.1 [CytoView hg38]
ImmunoBaseENSG00000137161
Genome Data Viewer NCBICNPY3 [Mapview hg19]  
OMIM610774   617929   
Gene and transcription
Genbank (Entrez)AF161347 AI202110 AK090425 AK124196 AY358960
RefSeq transcript (Entrez)NM_001318842 NM_001318845 NM_001318847 NM_001318848 NM_006586
Consensus coding sequences : CCDS (NCBI)CNPY3
Gene ExpressionCNPY3 [ NCBI-GEO ]   CNPY3 [ EBI - ARRAY_EXPRESS ]   CNPY3 [ SEEK ]   CNPY3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPY3 [ Firebrowse - Broad ]
GenevisibleExpression of CNPY3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10695
GTEX Portal (Tissue expression)CNPY3
Human Protein AtlasENSG00000137161-CNPY3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT09
PhosPhoSitePlusQ9BT09
Domains : Interpro (EBI)DUF3456   
Domain families : Pfam (Sanger)DUF3456 (PF11938)   
Domain families : Pfam (NCBI)pfam11938   
Conserved Domain (NCBI)CNPY3
SuperfamilyQ9BT09
AlphaFold pdb e-kbQ9BT09   
Human Protein Atlas [tissue]ENSG00000137161-CNPY3 [tissue]
HPRD06745
Protein Interaction databases
DIP (DOE-UCLA)Q9BT09
IntAct (EBI)Q9BT09
BioGRIDCNPY3
STRING (EMBL)CNPY3
ZODIACCNPY3
Ontologies - Pathways
QuickGOQ9BT09
Ontology : AmiGOtoll-like receptor signaling pathway  signaling receptor binding  protein binding  endoplasmic reticulum lumen  innate immune response  
Ontology : EGO-EBItoll-like receptor signaling pathway  signaling receptor binding  protein binding  endoplasmic reticulum lumen  innate immune response  
NDEx NetworkCNPY3
Atlas of Cancer Signalling NetworkCNPY3
Wikipedia pathwaysCNPY3
Orthology - Evolution
OrthoDB10695
GeneTree (enSembl)ENSG00000137161
Phylogenetic Trees/Animal Genes : TreeFamCNPY3
Homologs : HomoloGeneCNPY3
Homology/Alignments : Family Browser (UCSC)CNPY3
Gene fusions - Rearrangements
Fusion : QuiverCNPY3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPY3
dbVarCNPY3
ClinVarCNPY3
MonarchCNPY3
1000_GenomesCNPY3 
Exome Variant ServerCNPY3
GNOMAD BrowserENSG00000137161
Varsome BrowserCNPY3
ACMGCNPY3 variants
VarityQ9BT09
Genomic Variants (DGV)CNPY3 [DGVbeta]
DECIPHERCNPY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPY3 
Mutations
ICGC Data PortalCNPY3 
TCGA Data PortalCNPY3 
Broad Tumor PortalCNPY3
OASIS PortalCNPY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPY3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCNPY3
Mutations and Diseases : HGMDCNPY3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCNPY3
DgiDB (Drug Gene Interaction Database)CNPY3
DoCM (Curated mutations)CNPY3
CIViC (Clinical Interpretations of Variants in Cancer)CNPY3
Cancer3DCNPY3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610774    617929   
Orphanet
DisGeNETCNPY3
MedgenCNPY3
Genetic Testing Registry CNPY3
NextProtQ9BT09 [Medical]
GENETestsCNPY3
Target ValidationCNPY3
Huge Navigator CNPY3 [HugePedia]
ClinGenCNPY3
Clinical trials, drugs, therapy
MyCancerGenomeCNPY3
Protein Interactions : CTDCNPY3
Pharm GKB GenePA162382601
PharosQ9BT09
Clinical trialCNPY3
Miscellaneous
canSAR (ICR)CNPY3
HarmonizomeCNPY3
DataMed IndexCNPY3
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCNPY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:46:26 CEST 2021

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