Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CNPY4 (canopy FGF signaling regulator 4)

Identity

Alias_namescanopy 4 homolog (zebrafish)
Alias_symbol (synonym)MGC40499
PRAT4B
Other alias
HGNC (Hugo) CNPY4
LocusID (NCBI) 245812
Atlas_Id 61954
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100119642 and ends at 100125505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CNPY4   28631
Cards
Entrez_Gene (NCBI)CNPY4  245812  canopy FGF signaling regulator 4
AliasesPRAT4B
GeneCards (Weizmann)CNPY4
Ensembl hg19 (Hinxton)ENSG00000166997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166997 [Gene_View]  chr7:100119642-100125505 [Contig_View]  CNPY4 [Vega]
ICGC DataPortalENSG00000166997
TCGA cBioPortalCNPY4
AceView (NCBI)CNPY4
Genatlas (Paris)CNPY4
WikiGenes245812
SOURCE (Princeton)CNPY4
Genetics Home Reference (NIH)CNPY4
Genomic and cartography
GoldenPath hg38 (UCSC)CNPY4  -     chr7:100119642-100125505 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNPY4  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblCNPY4 - 7q22.1 [CytoView hg19]  CNPY4 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBICNPY4 [Mapview hg19]  CNPY4 [Mapview hg38]
OMIM610047   
Gene and transcription
Genbank (Entrez)AK075537 AY359100 BC019903 BC032339 DQ891593
RefSeq transcript (Entrez)NM_152755
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNPY4
Cluster EST : UnigeneHs.632293 [ NCBI ]
CGAP (NCI)Hs.632293
Alternative Splicing GalleryENSG00000166997
Gene ExpressionCNPY4 [ NCBI-GEO ]   CNPY4 [ EBI - ARRAY_EXPRESS ]   CNPY4 [ SEEK ]   CNPY4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNPY4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245812
GTEX Portal (Tissue expression)CNPY4
Human Protein AtlasENSG00000166997-CNPY4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N129   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N129  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N129
Splice isoforms : SwissVarQ8N129
PhosPhoSitePlusQ8N129
Domains : Interpro (EBI)DUF3456   
Domain families : Pfam (Sanger)DUF3456 (PF11938)   
Domain families : Pfam (NCBI)pfam11938   
Conserved Domain (NCBI)CNPY4
DMDM Disease mutations245812
Blocks (Seattle)CNPY4
SuperfamilyQ8N129
Human Protein Atlas [tissue]ENSG00000166997-CNPY4 [tissue]
Peptide AtlasQ8N129
HPRD14611
IPIIPI00102962   
Protein Interaction databases
DIP (DOE-UCLA)Q8N129
IntAct (EBI)Q8N129
FunCoupENSG00000166997
BioGRIDCNPY4
STRING (EMBL)CNPY4
ZODIACCNPY4
Ontologies - Pathways
QuickGOQ8N129
Ontology : AmiGOreceptor binding  extracellular region  
Ontology : EGO-EBIreceptor binding  extracellular region  
NDEx NetworkCNPY4
Atlas of Cancer Signalling NetworkCNPY4
Wikipedia pathwaysCNPY4
Orthology - Evolution
OrthoDB245812
GeneTree (enSembl)ENSG00000166997
Phylogenetic Trees/Animal Genes : TreeFamCNPY4
HOVERGENQ8N129
HOGENOMQ8N129
Homologs : HomoloGeneCNPY4
Homology/Alignments : Family Browser (UCSC)CNPY4
Gene fusions - Rearrangements
Fusion : QuiverCNPY4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNPY4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNPY4
dbVarCNPY4
ClinVarCNPY4
1000_GenomesCNPY4 
Exome Variant ServerCNPY4
ExAC (Exome Aggregation Consortium)ENSG00000166997
GNOMAD BrowserENSG00000166997
Genetic variants : HAPMAP245812
Genomic Variants (DGV)CNPY4 [DGVbeta]
DECIPHERCNPY4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNPY4 
Mutations
ICGC Data PortalCNPY4 
TCGA Data PortalCNPY4 
Broad Tumor PortalCNPY4
OASIS PortalCNPY4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNPY4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNPY4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNPY4
DgiDB (Drug Gene Interaction Database)CNPY4
DoCM (Curated mutations)CNPY4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNPY4 (select a term)
intoGenCNPY4
Cancer3DCNPY4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610047   
Orphanet
DisGeNETCNPY4
MedgenCNPY4
Genetic Testing Registry CNPY4
NextProtQ8N129 [Medical]
TSGene245812
GENETestsCNPY4
Target ValidationCNPY4
Huge Navigator CNPY4 [HugePedia]
snp3D : Map Gene to Disease245812
BioCentury BCIQCNPY4
ClinGenCNPY4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245812
Chemical/Pharm GKB GenePA162382618
Clinical trialCNPY4
Miscellaneous
canSAR (ICR)CNPY4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNPY4
EVEXCNPY4
GoPubMedCNPY4
iHOPCNPY4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:15:03 CET 2018
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