Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNRIP1 (cannabinoid receptor interacting protein 1)

Identity

Alias_namesC2orf32
chromosome 2 open reading frame 32
Alias_symbol (synonym)DKFZP566K1924
CRIP1
CRIP1a
CRIP1b
Other alias
HGNC (Hugo) CNRIP1
LocusID (NCBI) 25927
Atlas_Id 61955
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 68284171 and ends at 68320051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPP3R1 (2p14) / CNRIP1 (2p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNRIP1   24546
Cards
Entrez_Gene (NCBI)CNRIP1  25927  cannabinoid receptor interacting protein 1
AliasesC2orf32; CRIP1
GeneCards (Weizmann)CNRIP1
Ensembl hg19 (Hinxton)ENSG00000119865 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119865 [Gene_View]  chr2:68284171-68320051 [Contig_View]  CNRIP1 [Vega]
ICGC DataPortalENSG00000119865
TCGA cBioPortalCNRIP1
AceView (NCBI)CNRIP1
Gunátlas (Paris)CNRIP1
WikiGenes25927
SOURCE (Princeton)CNRIP1
Genetics Home Reference (NIH)CNRIP1
Genomic and cartography
GoldenPath hg38 (UCSC)CNRIP1  -     chr2:68284171-68320051 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNRIP1  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblCNRIP1 - 2p14 [CytoView hg19]  CNRIP1 - 2p14 [CytoView hg38]
Mapping of homologs : NCBICNRIP1 [Mapview hg19]  CNRIP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092542 AK308979 AK311784 AL110235 AY144596
RefSeq transcript (Entrez)NM_001111101 NM_015463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNRIP1
Cluster EST : UnigeneHs.212885 [ NCBI ]
CGAP (NCI)Hs.212885
Alternative Splicing GalleryENSG00000119865
Gene ExpressionCNRIP1 [ NCBI-GEO ]   CNRIP1 [ EBI - ARRAY_EXPRESS ]   CNRIP1 [ SEEK ]   CNRIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNRIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25927
GTEX Portal (Tissue expression)CNRIP1
Human Protein AtlasENSG00000119865-CNRIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F85
Splice isoforms : SwissVarQ96F85
PhosPhoSitePlusQ96F85
Domains : Interpro (EBI)CNRIP1   
Domain families : Pfam (Sanger)CNRIP1 (PF15043)   
Domain families : Pfam (NCBI)pfam15043   
Conserved Domain (NCBI)CNRIP1
DMDM Disease mutations25927
Blocks (Seattle)CNRIP1
SuperfamilyQ96F85
Human Protein Atlas [tissue]ENSG00000119865-CNRIP1 [tissue]
Peptide AtlasQ96F85
HPRD12813
IPIIPI00073958   IPI00879587   IPI00917077   
Protein Interaction databases
DIP (DOE-UCLA)Q96F85
IntAct (EBI)Q96F85
FunCoupENSG00000119865
BioGRIDCNRIP1
STRING (EMBL)CNRIP1
ZODIACCNRIP1
Ontologies - Pathways
QuickGOQ96F85
Ontology : AmiGOmyelin sheath  
Ontology : EGO-EBImyelin sheath  
NDEx NetworkCNRIP1
Atlas of Cancer Signalling NetworkCNRIP1
Wikipedia pathwaysCNRIP1
Orthology - Evolution
OrthoDB25927
GeneTree (enSembl)ENSG00000119865
Phylogenetic Trees/Animal Genes : TreeFamCNRIP1
HOVERGENQ96F85
HOGENOMQ96F85
Homologs : HomoloGeneCNRIP1
Homology/Alignments : Family Browser (UCSC)CNRIP1
Gene fusions - Rearrangements
Tumor Fusion PortalCNRIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNRIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNRIP1
dbVarCNRIP1
ClinVarCNRIP1
1000_GenomesCNRIP1 
Exome Variant ServerCNRIP1
ExAC (Exome Aggregation Consortium)ENSG00000119865
GNOMAD BrowserENSG00000119865
Genetic variants : HAPMAP25927
Genomic Variants (DGV)CNRIP1 [DGVbeta]
DECIPHERCNRIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNRIP1 
Mutations
ICGC Data PortalCNRIP1 
TCGA Data PortalCNRIP1 
Broad Tumor PortalCNRIP1
OASIS PortalCNRIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNRIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNRIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNRIP1
DgiDB (Drug Gene Interaction Database)CNRIP1
DoCM (Curated mutations)CNRIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNRIP1 (select a term)
intoGenCNRIP1
Cancer3DCNRIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCNRIP1
MedgenCNRIP1
Genetic Testing Registry CNRIP1
NextProtQ96F85 [Medical]
TSGene25927
GENETestsCNRIP1
Target ValidationCNRIP1
Huge Navigator CNRIP1 [HugePedia]
snp3D : Map Gene to Disease25927
BioCentury BCIQCNRIP1
ClinGenCNRIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25927
Chemical/Pharm GKB GenePA162382635
Clinical trialCNRIP1
Miscellaneous
canSAR (ICR)CNRIP1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNRIP1
EVEXCNRIP1
GoPubMedCNRIP1
iHOPCNRIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:15 CET 2017

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