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CNST (consortin, connexin sorting protein)

Identity

Alias_namesC1orf71
chromosome 1 open reading frame 71
Alias_symbol (synonym)FLJ32001
PPP1R64
Other alias
HGNC (Hugo) CNST
LocusID (NCBI) 163882
Atlas_Id 61956
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 246566337 and ends at 246648242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNST (1q44) / CNST (1q44)CNST (1q44) / RGS7 (1q43)MSN (Xq12) / CNST (1q44)
SCCPDH (1q44) / CNST (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNST   26486
Cards
Entrez_Gene (NCBI)CNST  163882  consortin, connexin sorting protein
AliasesC1orf71; PPP1R64
GeneCards (Weizmann)CNST
Ensembl hg19 (Hinxton)ENSG00000162852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162852 [Gene_View]  chr1:246566337-246648242 [Contig_View]  CNST [Vega]
ICGC DataPortalENSG00000162852
TCGA cBioPortalCNST
AceView (NCBI)CNST
Genatlas (Paris)CNST
WikiGenes163882
SOURCE (Princeton)CNST
Genetics Home Reference (NIH)CNST
Genomic and cartography
GoldenPath hg38 (UCSC)CNST  -     chr1:246566337-246648242 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNST  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblCNST - 1q44 [CytoView hg19]  CNST - 1q44 [CytoView hg38]
Mapping of homologs : NCBICNST [Mapview hg19]  CNST [Mapview hg38]
OMIM613439   
Gene and transcription
Genbank (Entrez)AK056563 AK074142 AK091739 AL834246 AM392580
RefSeq transcript (Entrez)NM_001139459 NM_152609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNST
Cluster EST : UnigeneHs.368353 [ NCBI ]
CGAP (NCI)Hs.368353
Alternative Splicing GalleryENSG00000162852
Gene ExpressionCNST [ NCBI-GEO ]   CNST [ EBI - ARRAY_EXPRESS ]   CNST [ SEEK ]   CNST [ MEM ]
Gene Expression Viewer (FireBrowse)CNST [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163882
GTEX Portal (Tissue expression)CNST
Human Protein AtlasENSG00000162852-CNST [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJW8
Splice isoforms : SwissVarQ6PJW8
PhosPhoSitePlusQ6PJW8
Domains : Interpro (EBI)Consortin_C   
Domain families : Pfam (Sanger)Consortin_C (PF15281)   
Domain families : Pfam (NCBI)pfam15281   
Conserved Domain (NCBI)CNST
DMDM Disease mutations163882
Blocks (Seattle)CNST
SuperfamilyQ6PJW8
Human Protein Atlas [tissue]ENSG00000162852-CNST [tissue]
Peptide AtlasQ6PJW8
HPRD08718
IPIIPI00465154   IPI00640991   IPI00847817   IPI00479443   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJW8
IntAct (EBI)Q6PJW8
FunCoupENSG00000162852
BioGRIDCNST
STRING (EMBL)CNST
ZODIACCNST
Ontologies - Pathways
QuickGOQ6PJW8
Ontology : AmiGOprotein binding  trans-Golgi network  plasma membrane  negative regulation of phosphatase activity  membrane  integral component of membrane  phosphatase binding  transport vesicle  positive regulation of Golgi to plasma membrane protein transport  intracellular membrane-bounded organelle  protein complex  connexin binding  
Ontology : EGO-EBIprotein binding  trans-Golgi network  plasma membrane  negative regulation of phosphatase activity  membrane  integral component of membrane  phosphatase binding  transport vesicle  positive regulation of Golgi to plasma membrane protein transport  intracellular membrane-bounded organelle  protein complex  connexin binding  
NDEx NetworkCNST
Atlas of Cancer Signalling NetworkCNST
Wikipedia pathwaysCNST
Orthology - Evolution
OrthoDB163882
GeneTree (enSembl)ENSG00000162852
Phylogenetic Trees/Animal Genes : TreeFamCNST
HOVERGENQ6PJW8
HOGENOMQ6PJW8
Homologs : HomoloGeneCNST
Homology/Alignments : Family Browser (UCSC)CNST
Gene fusions - Rearrangements
Tumor Fusion PortalCNST
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNST [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNST
dbVarCNST
ClinVarCNST
1000_GenomesCNST 
Exome Variant ServerCNST
ExAC (Exome Aggregation Consortium)ENSG00000162852
GNOMAD BrowserENSG00000162852
Genetic variants : HAPMAP163882
Genomic Variants (DGV)CNST [DGVbeta]
DECIPHERCNST [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNST 
Mutations
ICGC Data PortalCNST 
TCGA Data PortalCNST 
Broad Tumor PortalCNST
OASIS PortalCNST [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNST  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNST
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNST
DgiDB (Drug Gene Interaction Database)CNST
DoCM (Curated mutations)CNST (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNST (select a term)
intoGenCNST
Cancer3DCNST(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613439   
Orphanet
DisGeNETCNST
MedgenCNST
Genetic Testing Registry CNST
NextProtQ6PJW8 [Medical]
TSGene163882
GENETestsCNST
Target ValidationCNST
Huge Navigator CNST [HugePedia]
snp3D : Map Gene to Disease163882
BioCentury BCIQCNST
ClinGenCNST
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163882
Chemical/Pharm GKB GenePA165751017
Clinical trialCNST
Miscellaneous
canSAR (ICR)CNST (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNST
EVEXCNST
GoPubMedCNST
iHOPCNST
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:44 CET 2017

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