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CNTD1 (cyclin N-terminal domain containing 1)

Identity

Alias_namesCNTD
cyclin N-terminal domain containing
Alias_symbol (synonym)FLJ40137
Other alias
HGNC (Hugo) CNTD1
LocusID (NCBI) 124817
Atlas_Id 61957
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42798887 and ends at 42811587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNTD1 (17q21.31) / BECN1 (17q21.31)LOC100507412 (-) / CNTD1 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTD1   26847
Cards
Entrez_Gene (NCBI)CNTD1  124817  cyclin N-terminal domain containing 1
AliasesCNTD
GeneCards (Weizmann)CNTD1
Ensembl hg19 (Hinxton)ENSG00000176563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176563 [Gene_View]  chr17:42798887-42811587 [Contig_View]  CNTD1 [Vega]
ICGC DataPortalENSG00000176563
TCGA cBioPortalCNTD1
AceView (NCBI)CNTD1
Genatlas (Paris)CNTD1
WikiGenes124817
SOURCE (Princeton)CNTD1
Genetics Home Reference (NIH)CNTD1
Genomic and cartography
GoldenPath hg38 (UCSC)CNTD1  -     chr17:42798887-42811587 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTD1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblCNTD1 - 17q21.2 [CytoView hg19]  CNTD1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBICNTD1 [Mapview hg19]  CNTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097456 AK302094 AL833052 BC026187 DC397820
RefSeq transcript (Entrez)NM_001330222 NM_173478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTD1
Cluster EST : UnigeneHs.12272 [ NCBI ]
CGAP (NCI)Hs.12272
Alternative Splicing GalleryENSG00000176563
Gene ExpressionCNTD1 [ NCBI-GEO ]   CNTD1 [ EBI - ARRAY_EXPRESS ]   CNTD1 [ SEEK ]   CNTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124817
GTEX Portal (Tissue expression)CNTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N815   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N815  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N815
Splice isoforms : SwissVarQ8N815
PhosPhoSitePlusQ8N815
Domains : Interpro (EBI)Cyclin-like    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Conserved Domain (NCBI)CNTD1
DMDM Disease mutations124817
Blocks (Seattle)CNTD1
SuperfamilyQ8N815
Human Protein AtlasENSG00000176563
Peptide AtlasQ8N815
HPRD08271
IPIIPI00167285   IPI00878243   
Protein Interaction databases
DIP (DOE-UCLA)Q8N815
IntAct (EBI)Q8N815
FunCoupENSG00000176563
BioGRIDCNTD1
STRING (EMBL)CNTD1
ZODIACCNTD1
Ontologies - Pathways
QuickGOQ8N815
Ontology : AmiGOreciprocal meiotic recombination  spermatogenesis  
Ontology : EGO-EBIreciprocal meiotic recombination  spermatogenesis  
NDEx NetworkCNTD1
Atlas of Cancer Signalling NetworkCNTD1
Wikipedia pathwaysCNTD1
Orthology - Evolution
OrthoDB124817
GeneTree (enSembl)ENSG00000176563
Phylogenetic Trees/Animal Genes : TreeFamCNTD1
HOVERGENQ8N815
HOGENOMQ8N815
Homologs : HomoloGeneCNTD1
Homology/Alignments : Family Browser (UCSC)CNTD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTD1
dbVarCNTD1
ClinVarCNTD1
1000_GenomesCNTD1 
Exome Variant ServerCNTD1
ExAC (Exome Aggregation Consortium)CNTD1 (select the gene name)
Genetic variants : HAPMAP124817
Genomic Variants (DGV)CNTD1 [DGVbeta]
DECIPHERCNTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTD1 
Mutations
ICGC Data PortalCNTD1 
TCGA Data PortalCNTD1 
Broad Tumor PortalCNTD1
OASIS PortalCNTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTD1
DgiDB (Drug Gene Interaction Database)CNTD1
DoCM (Curated mutations)CNTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTD1 (select a term)
intoGenCNTD1
Cancer3DCNTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNTD1
Genetic Testing Registry CNTD1
NextProtQ8N815 [Medical]
TSGene124817
GENETestsCNTD1
Target ValidationCNTD1
Huge Navigator CNTD1 [HugePedia]
snp3D : Map Gene to Disease124817
BioCentury BCIQCNTD1
ClinGenCNTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124817
Chemical/Pharm GKB GenePA142672089
Clinical trialCNTD1
Miscellaneous
canSAR (ICR)CNTD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTD1
EVEXCNTD1
GoPubMedCNTD1
iHOPCNTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:05:05 CEST 2017

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