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CNTFR (ciliary neurotrophic factor receptor)

Identity

Other alias-
HGNC (Hugo) CNTFR
LocusID (NCBI) 1271
Atlas_Id 50142
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34551432 and ends at 34590140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RALGAPA2 (20p11.23) / CNTFR (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTFR   2170
Cards
Entrez_Gene (NCBI)CNTFR  1271  ciliary neurotrophic factor receptor
Aliases
GeneCards (Weizmann)CNTFR
Ensembl hg19 (Hinxton)ENSG00000122756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122756 [Gene_View]  chr9:34551432-34590140 [Contig_View]  CNTFR [Vega]
ICGC DataPortalENSG00000122756
TCGA cBioPortalCNTFR
AceView (NCBI)CNTFR
Genatlas (Paris)CNTFR
WikiGenes1271
SOURCE (Princeton)CNTFR
Genetics Home Reference (NIH)CNTFR
Genomic and cartography
GoldenPath hg38 (UCSC)CNTFR  -     chr9:34551432-34590140 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTFR  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblCNTFR - 9p13.3 [CytoView hg19]  CNTFR - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICNTFR [Mapview hg19]  CNTFR [Mapview hg38]
OMIM118946   
Gene and transcription
Genbank (Entrez)AK127444 AL537375 BC001492 BI545014 BI829871
RefSeq transcript (Entrez)NM_001207011 NM_001842 NM_147164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTFR
Cluster EST : UnigeneHs.129966 [ NCBI ]
CGAP (NCI)Hs.129966
Alternative Splicing GalleryENSG00000122756
Gene ExpressionCNTFR [ NCBI-GEO ]   CNTFR [ EBI - ARRAY_EXPRESS ]   CNTFR [ SEEK ]   CNTFR [ MEM ]
Gene Expression Viewer (FireBrowse)CNTFR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1271
GTEX Portal (Tissue expression)CNTFR
Human Protein AtlasENSG00000122756-CNTFR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26992   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP26992  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP26992
Splice isoforms : SwissVarP26992
PhosPhoSitePlusP26992
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    HEMATOPO_REC_L_F3 (PS01354)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Hematopoietin_rcpt_L_F3_CS    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CNTFR
DMDM Disease mutations1271
Blocks (Seattle)CNTFR
PDB (SRS)1UC6   
PDB (PDBSum)1UC6   
PDB (IMB)1UC6   
PDB (RSDB)1UC6   
Structural Biology KnowledgeBase1UC6   
SCOP (Structural Classification of Proteins)1UC6   
CATH (Classification of proteins structures)1UC6   
SuperfamilyP26992
Human Protein Atlas [tissue]ENSG00000122756-CNTFR [tissue]
Peptide AtlasP26992
HPRD00348
IPIIPI00003102   IPI00641374   
Protein Interaction databases
DIP (DOE-UCLA)P26992
IntAct (EBI)P26992
FunCoupENSG00000122756
BioGRIDCNTFR
STRING (EMBL)CNTFR
ZODIACCNTFR
Ontologies - Pathways
QuickGOP26992
Ontology : AmiGOsuckling behavior  brainstem development  ciliary neurotrophic factor receptor activity  receptor binding  protein binding  plasma membrane  signal transduction  nervous system development  sex differentiation  positive regulation of cell proliferation  apical plasma membrane  extrinsic component of membrane  cytokine binding  anchored component of membrane  negative regulation of neuron apoptotic process  skeletal muscle organ development  ciliary neurotrophic factor receptor complex  ciliary neurotrophic factor-mediated signaling pathway  CNTFR-CLCF1 complex  
Ontology : EGO-EBIsuckling behavior  brainstem development  ciliary neurotrophic factor receptor activity  receptor binding  protein binding  plasma membrane  signal transduction  nervous system development  sex differentiation  positive regulation of cell proliferation  apical plasma membrane  extrinsic component of membrane  cytokine binding  anchored component of membrane  negative regulation of neuron apoptotic process  skeletal muscle organ development  ciliary neurotrophic factor receptor complex  ciliary neurotrophic factor-mediated signaling pathway  CNTFR-CLCF1 complex  
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway   
NDEx NetworkCNTFR
Atlas of Cancer Signalling NetworkCNTFR
Wikipedia pathwaysCNTFR
Orthology - Evolution
OrthoDB1271
GeneTree (enSembl)ENSG00000122756
Phylogenetic Trees/Animal Genes : TreeFamCNTFR
HOVERGENP26992
HOGENOMP26992
Homologs : HomoloGeneCNTFR
Homology/Alignments : Family Browser (UCSC)CNTFR
Gene fusions - Rearrangements
Tumor Fusion PortalCNTFR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTFR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTFR
dbVarCNTFR
ClinVarCNTFR
1000_GenomesCNTFR 
Exome Variant ServerCNTFR
ExAC (Exome Aggregation Consortium)ENSG00000122756
GNOMAD BrowserENSG00000122756
Genetic variants : HAPMAP1271
Genomic Variants (DGV)CNTFR [DGVbeta]
DECIPHERCNTFR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTFR 
Mutations
ICGC Data PortalCNTFR 
TCGA Data PortalCNTFR 
Broad Tumor PortalCNTFR
OASIS PortalCNTFR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTFR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTFR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTFR
DgiDB (Drug Gene Interaction Database)CNTFR
DoCM (Curated mutations)CNTFR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTFR (select a term)
intoGenCNTFR
Cancer3DCNTFR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118946   
Orphanet
DisGeNETCNTFR
MedgenCNTFR
Genetic Testing Registry CNTFR
NextProtP26992 [Medical]
TSGene1271
GENETestsCNTFR
Target ValidationCNTFR
Huge Navigator CNTFR [HugePedia]
snp3D : Map Gene to Disease1271
BioCentury BCIQCNTFR
ClinGenCNTFR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1271
Chemical/Pharm GKB GenePA26684
Clinical trialCNTFR
Miscellaneous
canSAR (ICR)CNTFR (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTFR
EVEXCNTFR
GoPubMedCNTFR
iHOPCNTFR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:23 CET 2017

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