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CNTLN (centlein)

Identity

Alias_namesC9orf101
C9orf39
chromosome 9 open reading frame 101
chromosome 9 open reading frame 39
centlein, centrosomal protein
Alias_symbol (synonym)FLJ20276
bA340N12.1
OTTHUMG00000019597
Other alias
HGNC (Hugo) CNTLN
LocusID (NCBI) 54875
Atlas_Id 61960
Location 9p22.2  [Link to chromosome band 9p22]
Location_base_pair Starts at 17134991 and ends at 17302051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNTLN (9p22.2) / ADAMTSL1 (9p22.2)CNTLN (9p22.2) / CNTLN (9p22.2)CNTLN (9p22.2) / RFX3 (9p24.2)
CNTLN (9p22.2) / RPS6 (9p22.1)SNX30 (9q32) / CNTLN (9p22.2)USP43 (17p13.1) / CNTLN (9p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTLN   23432
Cards
Entrez_Gene (NCBI)CNTLN  54875  centlein
AliasesC9orf101; C9orf39; bA340N12.1
GeneCards (Weizmann)CNTLN
Ensembl hg19 (Hinxton)ENSG00000044459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000044459 [Gene_View]  chr9:17134991-17302051 [Contig_View]  CNTLN [Vega]
ICGC DataPortalENSG00000044459
TCGA cBioPortalCNTLN
AceView (NCBI)CNTLN
Genatlas (Paris)CNTLN
WikiGenes54875
SOURCE (Princeton)CNTLN
Genetics Home Reference (NIH)CNTLN
Genomic and cartography
GoldenPath hg38 (UCSC)CNTLN  -     chr9:17134991-17302051 +  9p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTLN  -     9p22.2   [Description]    (hg19-Feb_2009)
EnsemblCNTLN - 9p22.2 [CytoView hg19]  CNTLN - 9p22.2 [CytoView hg38]
Mapping of homologs : NCBICNTLN [Mapview hg19]  CNTLN [Mapview hg38]
OMIM611870   
Gene and transcription
Genbank (Entrez)AA492222 AA828123 AK000283 AK021596 AK098502
RefSeq transcript (Entrez)NM_001114395 NM_001286984 NM_001286985 NM_017738
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTLN
Cluster EST : UnigeneHs.435381 [ NCBI ]
CGAP (NCI)Hs.435381
Alternative Splicing GalleryENSG00000044459
Gene ExpressionCNTLN [ NCBI-GEO ]   CNTLN [ EBI - ARRAY_EXPRESS ]   CNTLN [ SEEK ]   CNTLN [ MEM ]
Gene Expression Viewer (FireBrowse)CNTLN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54875
GTEX Portal (Tissue expression)CNTLN
Human Protein AtlasENSG00000044459-CNTLN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXG0
Splice isoforms : SwissVarQ9NXG0
PhosPhoSitePlusQ9NXG0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CNTLN
DMDM Disease mutations54875
Blocks (Seattle)CNTLN
SuperfamilyQ9NXG0
Human Protein Atlas [tissue]ENSG00000044459-CNTLN [tissue]
Peptide AtlasQ9NXG0
HPRD10800
IPIIPI00815832   IPI00657839   IPI00889646   IPI00941335   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXG0
IntAct (EBI)Q9NXG0
FunCoupENSG00000044459
BioGRIDCNTLN
STRING (EMBL)CNTLN
ZODIACCNTLN
Ontologies - Pathways
QuickGOQ9NXG0
Ontology : AmiGOnucleoplasm  cytoplasm  centrosome  centriole  cytosol  centriole-centriole cohesion  protein kinase binding  protein domain specific binding  protein binding, bridging  protein localization to organelle  extracellular exosome  
Ontology : EGO-EBInucleoplasm  cytoplasm  centrosome  centriole  cytosol  centriole-centriole cohesion  protein kinase binding  protein domain specific binding  protein binding, bridging  protein localization to organelle  extracellular exosome  
NDEx NetworkCNTLN
Atlas of Cancer Signalling NetworkCNTLN
Wikipedia pathwaysCNTLN
Orthology - Evolution
OrthoDB54875
GeneTree (enSembl)ENSG00000044459
Phylogenetic Trees/Animal Genes : TreeFamCNTLN
HOVERGENQ9NXG0
HOGENOMQ9NXG0
Homologs : HomoloGeneCNTLN
Homology/Alignments : Family Browser (UCSC)CNTLN
Gene fusions - Rearrangements
Tumor Fusion PortalCNTLN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTLN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTLN
dbVarCNTLN
ClinVarCNTLN
1000_GenomesCNTLN 
Exome Variant ServerCNTLN
ExAC (Exome Aggregation Consortium)ENSG00000044459
GNOMAD BrowserENSG00000044459
Genetic variants : HAPMAP54875
Genomic Variants (DGV)CNTLN [DGVbeta]
DECIPHERCNTLN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTLN 
Mutations
ICGC Data PortalCNTLN 
TCGA Data PortalCNTLN 
Broad Tumor PortalCNTLN
OASIS PortalCNTLN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTLN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTLN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTLN
DgiDB (Drug Gene Interaction Database)CNTLN
DoCM (Curated mutations)CNTLN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTLN (select a term)
intoGenCNTLN
Cancer3DCNTLN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611870   
Orphanet
DisGeNETCNTLN
MedgenCNTLN
Genetic Testing Registry CNTLN
NextProtQ9NXG0 [Medical]
TSGene54875
GENETestsCNTLN
Target ValidationCNTLN
Huge Navigator CNTLN [HugePedia]
snp3D : Map Gene to Disease54875
BioCentury BCIQCNTLN
ClinGenCNTLN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54875
Chemical/Pharm GKB GenePA162382646
Clinical trialCNTLN
Miscellaneous
canSAR (ICR)CNTLN (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTLN
EVEXCNTLN
GoPubMedCNTLN
iHOPCNTLN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:33 CET 2017

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