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CNTN3 (contactin 3)

Identity

Alias_namesPANG
contactin 3 (plasmacytoma associated)
Alias_symbol (synonym)BIG-1
Other aliasPCS
HGNC (Hugo) CNTN3
LocusID (NCBI) 5067
Atlas_Id 40119
Location 3p12.3  [Link to chromosome band 3p12]
Location_base_pair Starts at 74262569 and ends at 74521140 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTN3   2173
Cards
Entrez_Gene (NCBI)CNTN3  5067  contactin 3
AliasesBIG-1; PANG; PCS
GeneCards (Weizmann)CNTN3
Ensembl hg19 (Hinxton)ENSG00000113805 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113805 [Gene_View]  chr3:74262569-74521140 [Contig_View]  CNTN3 [Vega]
ICGC DataPortalENSG00000113805
TCGA cBioPortalCNTN3
AceView (NCBI)CNTN3
Genatlas (Paris)CNTN3
WikiGenes5067
SOURCE (Princeton)CNTN3
Genetics Home Reference (NIH)CNTN3
Genomic and cartography
GoldenPath hg38 (UCSC)CNTN3  -     chr3:74262569-74521140 -  3p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTN3  -     3p12.3   [Description]    (hg19-Feb_2009)
EnsemblCNTN3 - 3p12.3 [CytoView hg19]  CNTN3 - 3p12.3 [CytoView hg38]
Mapping of homologs : NCBICNTN3 [Mapview hg19]  CNTN3 [Mapview hg38]
OMIM601325   
Gene and transcription
Genbank (Entrez)AB040929 AK001157 AL512746 BC150608 BX951442
RefSeq transcript (Entrez)NM_020872
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTN3
Cluster EST : UnigeneHs.12723 [ NCBI ]
CGAP (NCI)Hs.12723
Alternative Splicing GalleryENSG00000113805
Gene ExpressionCNTN3 [ NCBI-GEO ]   CNTN3 [ EBI - ARRAY_EXPRESS ]   CNTN3 [ SEEK ]   CNTN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5067
GTEX Portal (Tissue expression)CNTN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P232
Splice isoforms : SwissVarQ9P232
PhosPhoSitePlusQ9P232
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CNTN3
DMDM Disease mutations5067
Blocks (Seattle)CNTN3
PDB (SRS)1WJ3   
PDB (PDBSum)1WJ3   
PDB (IMB)1WJ3   
PDB (RSDB)1WJ3   
Structural Biology KnowledgeBase1WJ3   
SCOP (Structural Classification of Proteins)1WJ3   
CATH (Classification of proteins structures)1WJ3   
SuperfamilyQ9P232
Human Protein AtlasENSG00000113805
Peptide AtlasQ9P232
IPIIPI00292791   
Protein Interaction databases
DIP (DOE-UCLA)Q9P232
IntAct (EBI)Q9P232
FunCoupENSG00000113805
BioGRIDCNTN3
STRING (EMBL)CNTN3
ZODIACCNTN3
Ontologies - Pathways
QuickGOQ9P232
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  nervous system development  anchored component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  nervous system development  anchored component of membrane  
NDEx NetworkCNTN3
Atlas of Cancer Signalling NetworkCNTN3
Wikipedia pathwaysCNTN3
Orthology - Evolution
OrthoDB5067
GeneTree (enSembl)ENSG00000113805
Phylogenetic Trees/Animal Genes : TreeFamCNTN3
HOVERGENQ9P232
HOGENOMQ9P232
Homologs : HomoloGeneCNTN3
Homology/Alignments : Family Browser (UCSC)CNTN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTN3
dbVarCNTN3
ClinVarCNTN3
1000_GenomesCNTN3 
Exome Variant ServerCNTN3
ExAC (Exome Aggregation Consortium)CNTN3 (select the gene name)
Genetic variants : HAPMAP5067
Genomic Variants (DGV)CNTN3 [DGVbeta]
DECIPHERCNTN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTN3 
Mutations
ICGC Data PortalCNTN3 
TCGA Data PortalCNTN3 
Broad Tumor PortalCNTN3
OASIS PortalCNTN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTN3
DgiDB (Drug Gene Interaction Database)CNTN3
DoCM (Curated mutations)CNTN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTN3 (select a term)
intoGenCNTN3
Cancer3DCNTN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601325   
Orphanet
MedgenCNTN3
Genetic Testing Registry CNTN3
NextProtQ9P232 [Medical]
TSGene5067
GENETestsCNTN3
Target ValidationCNTN3
Huge Navigator CNTN3 [HugePedia]
snp3D : Map Gene to Disease5067
BioCentury BCIQCNTN3
ClinGenCNTN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5067
Chemical/Pharm GKB GenePA26687
Clinical trialCNTN3
Miscellaneous
canSAR (ICR)CNTN3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTN3
EVEXCNTN3
GoPubMedCNTN3
iHOPCNTN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:01 CEST 2017

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