Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CNTN4-AS2 (CNTN4 antisense RNA 2)

Identity

Alias_namesCNTN4 antisense RNA 2 (non-protein coding)
Other alias-
HGNC (Hugo) CNTN4-AS2
LocusID (NCBI) 100873976
Atlas_Id 61962
Location 3p26.3  [Link to chromosome band 3p26]
Location_base_pair Starts at 2110409 and ends at 2144241 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTN4-AS2   39986
Cards
Entrez_Gene (NCBI)CNTN4-AS2  100873976  CNTN4 antisense RNA 2
Aliases
GeneCards (Weizmann)CNTN4-AS2
Ensembl hg19 (Hinxton)ENSG00000227588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227588 [Gene_View]  chr3:2110409-2144241 [Contig_View]  CNTN4-AS2 [Vega]
ICGC DataPortalENSG00000227588
TCGA cBioPortalCNTN4-AS2
AceView (NCBI)CNTN4-AS2
Genatlas (Paris)CNTN4-AS2
WikiGenes100873976
SOURCE (Princeton)CNTN4-AS2
Genetics Home Reference (NIH)CNTN4-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)CNTN4-AS2  -     chr3:2110409-2144241 -  3p26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTN4-AS2  -     3p26.3   [Description]    (hg19-Feb_2009)
EnsemblCNTN4-AS2 - 3p26.3 [CytoView hg19]  CNTN4-AS2 - 3p26.3 [CytoView hg38]
Mapping of homologs : NCBICNTN4-AS2 [Mapview hg19]  CNTN4-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE041831
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTN4-AS2
Cluster EST : UnigeneHs.611138 [ NCBI ]
CGAP (NCI)Hs.611138
Alternative Splicing GalleryENSG00000227588
Gene ExpressionCNTN4-AS2 [ NCBI-GEO ]   CNTN4-AS2 [ EBI - ARRAY_EXPRESS ]   CNTN4-AS2 [ SEEK ]   CNTN4-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTN4-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873976
GTEX Portal (Tissue expression)CNTN4-AS2
Human Protein AtlasENSG00000227588-CNTN4-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CNTN4-AS2
DMDM Disease mutations100873976
Blocks (Seattle)CNTN4-AS2
Human Protein Atlas [tissue]ENSG00000227588-CNTN4-AS2 [tissue]
Protein Interaction databases
FunCoupENSG00000227588
BioGRIDCNTN4-AS2
STRING (EMBL)CNTN4-AS2
ZODIACCNTN4-AS2
Ontologies - Pathways
Huge Navigator CNTN4-AS2 [HugePedia]
snp3D : Map Gene to Disease100873976
BioCentury BCIQCNTN4-AS2
ClinGenCNTN4-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873976
Clinical trialCNTN4-AS2
Miscellaneous
canSAR (ICR)CNTN4-AS2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTN4-AS2
EVEXCNTN4-AS2
GoPubMedCNTN4-AS2
iHOPCNTN4-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:01 CET 2017

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