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CNTN6 (contactin 6)

Identity

Alias_symbol (synonym)NB-3
Other aliasNB3
HGNC (Hugo) CNTN6
LocusID (NCBI) 27255
Atlas_Id 51231
Location 3p26.3  [Link to chromosome band 3p26]
Location_base_pair Starts at 1092658 and ends at 1403608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYB5R4 (6q14.2) / CNTN6 (3p26.3)EPHA6 (3q11.2) / CNTN6 (3p26.3)CYB5R4 6q14.2 / CNTN6 3p26.3
EPHA6 3q11.2 / CNTN6 3p26.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTN6   2176
Cards
Entrez_Gene (NCBI)CNTN6  27255  contactin 6
AliasesNB3
GeneCards (Weizmann)CNTN6
Ensembl hg19 (Hinxton)ENSG00000134115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134115 [Gene_View]  chr3:1092658-1403608 [Contig_View]  CNTN6 [Vega]
ICGC DataPortalENSG00000134115
TCGA cBioPortalCNTN6
AceView (NCBI)CNTN6
Genatlas (Paris)CNTN6
WikiGenes27255
SOURCE (Princeton)CNTN6
Genetics Home Reference (NIH)CNTN6
Genomic and cartography
GoldenPath hg38 (UCSC)CNTN6  -     chr3:1092658-1403608 +  3p26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTN6  -     3p26.3   [Description]    (hg19-Feb_2009)
EnsemblCNTN6 - 3p26.3 [CytoView hg19]  CNTN6 - 3p26.3 [CytoView hg38]
Mapping of homologs : NCBICNTN6 [Mapview hg19]  CNTN6 [Mapview hg38]
OMIM607220   
Gene and transcription
Genbank (Entrez)AB003592 AK125798 AK294786 AK307814 AK314220
RefSeq transcript (Entrez)NM_001289080 NM_001289081 NM_001349350 NM_001349351 NM_001349352 NM_001349353 NM_001349354 NM_001349355 NM_001349356 NM_001349357 NM_001349358 NM_001349359 NM_001349360 NM_001349361 NM_001349362 NM_014461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTN6
Cluster EST : UnigeneHs.590078 [ NCBI ]
CGAP (NCI)Hs.590078
Alternative Splicing GalleryENSG00000134115
Gene ExpressionCNTN6 [ NCBI-GEO ]   CNTN6 [ EBI - ARRAY_EXPRESS ]   CNTN6 [ SEEK ]   CNTN6 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTN6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27255
GTEX Portal (Tissue expression)CNTN6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ52
Splice isoforms : SwissVarQ9UQ52
PhosPhoSitePlusQ9UQ52
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)Contactin-6    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CNTN6
DMDM Disease mutations27255
Blocks (Seattle)CNTN6
SuperfamilyQ9UQ52
Human Protein AtlasENSG00000134115
Peptide AtlasQ9UQ52
HPRD06242
IPIIPI00004433   IPI01012177   IPI00927113   IPI00925940   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ52
IntAct (EBI)Q9UQ52
FunCoupENSG00000134115
BioGRIDCNTN6
STRING (EMBL)CNTN6
ZODIACCNTN6
Ontologies - Pathways
QuickGOQ9UQ52
Ontology : AmiGONotch binding  plasma membrane  cell adhesion  Notch signaling pathway  central nervous system development  neuron differentiation  anchored component of membrane  positive regulation of Notch signaling pathway  
Ontology : EGO-EBINotch binding  plasma membrane  cell adhesion  Notch signaling pathway  central nervous system development  neuron differentiation  anchored component of membrane  positive regulation of Notch signaling pathway  
NDEx NetworkCNTN6
Atlas of Cancer Signalling NetworkCNTN6
Wikipedia pathwaysCNTN6
Orthology - Evolution
OrthoDB27255
GeneTree (enSembl)ENSG00000134115
Phylogenetic Trees/Animal Genes : TreeFamCNTN6
HOVERGENQ9UQ52
HOGENOMQ9UQ52
Homologs : HomoloGeneCNTN6
Homology/Alignments : Family Browser (UCSC)CNTN6
Gene fusions - Rearrangements
Fusion : MitelmanCYB5R4/CNTN6 [6q14.2/3p26.3]  [t(3;6)(p26;q14)]  
Fusion : MitelmanEPHA6/CNTN6 [3q11.2/3p26.3]  [t(3;3)(p26;q11)]  
Fusion: TCGACYB5R4 6q14.2 CNTN6 3p26.3 BRCA
Fusion: TCGAEPHA6 3q11.2 CNTN6 3p26.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTN6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTN6
dbVarCNTN6
ClinVarCNTN6
1000_GenomesCNTN6 
Exome Variant ServerCNTN6
ExAC (Exome Aggregation Consortium)CNTN6 (select the gene name)
Genetic variants : HAPMAP27255
Genomic Variants (DGV)CNTN6 [DGVbeta]
DECIPHERCNTN6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTN6 
Mutations
ICGC Data PortalCNTN6 
TCGA Data PortalCNTN6 
Broad Tumor PortalCNTN6
OASIS PortalCNTN6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTN6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTN6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTN6
DgiDB (Drug Gene Interaction Database)CNTN6
DoCM (Curated mutations)CNTN6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTN6 (select a term)
intoGenCNTN6
Cancer3DCNTN6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607220   
Orphanet
MedgenCNTN6
Genetic Testing Registry CNTN6
NextProtQ9UQ52 [Medical]
TSGene27255
GENETestsCNTN6
Target ValidationCNTN6
Huge Navigator CNTN6 [HugePedia]
snp3D : Map Gene to Disease27255
BioCentury BCIQCNTN6
ClinGenCNTN6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27255
Chemical/Pharm GKB GenePA26690
Clinical trialCNTN6
Miscellaneous
canSAR (ICR)CNTN6 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTN6
EVEXCNTN6
GoPubMedCNTN6
iHOPCNTN6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:02 CEST 2017

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