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CNTNAP3 (contactin associated protein-like 3)

Identity

Alias_namesKIAA1714)
Alias_symbol (synonym)CASPR3
KIAA1714
FLJ14195
CNTNAP3A
Other alias
HGNC (Hugo) CNTNAP3
LocusID (NCBI) 79937
Atlas_Id 55523
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 39072767 and ends at 39288303 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTNAP3   13834
Cards
Entrez_Gene (NCBI)CNTNAP3  79937  contactin associated protein-like 3
AliasesCASPR3; CNTNAP3A
GeneCards (Weizmann)CNTNAP3
Ensembl hg19 (Hinxton)ENSG00000106714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106714 [Gene_View]  chr9:39072767-39288303 [Contig_View]  CNTNAP3 [Vega]
ICGC DataPortalENSG00000106714
TCGA cBioPortalCNTNAP3
AceView (NCBI)CNTNAP3
Genatlas (Paris)CNTNAP3
WikiGenes79937
SOURCE (Princeton)CNTNAP3
Genetics Home Reference (NIH)CNTNAP3
Genomic and cartography
GoldenPath hg38 (UCSC)CNTNAP3  -     chr9:39072767-39288303 -  9p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTNAP3  -     9p12   [Description]    (hg19-Feb_2009)
EnsemblCNTNAP3 - 9p12 [CytoView hg19]  CNTNAP3 - 9p12 [CytoView hg38]
Mapping of homologs : NCBICNTNAP3 [Mapview hg19]  CNTNAP3 [Mapview hg38]
OMIM610517   
Gene and transcription
Genbank (Entrez)AB051501 AF333769 AK056833 AK294281 AU130948
RefSeq transcript (Entrez)NM_033655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTNAP3
Cluster EST : UnigeneHs.604441 [ NCBI ]
CGAP (NCI)Hs.604441
Alternative Splicing GalleryENSG00000106714
Gene ExpressionCNTNAP3 [ NCBI-GEO ]   CNTNAP3 [ EBI - ARRAY_EXPRESS ]   CNTNAP3 [ SEEK ]   CNTNAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTNAP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79937
GTEX Portal (Tissue expression)CNTNAP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ76
Splice isoforms : SwissVarQ9BZ76
PhosPhoSitePlusQ9BZ76
Domaine pattern : Prosite (Expaxy)EGF_3 (PS50026)    FA58C_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)    FIBRINOGEN_C_2 (PS51406)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)CASPR3    ConA-like_dom    EGF-like_dom    FA58C    Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_dom    Galactose-bd-like    Laminin_G   
Domain families : Pfam (Sanger)F5_F8_type_C (PF00754)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00754    pfam02210   
Domain families : Smart (EMBL)EGF (SM00181)  FA58C (SM00231)  LamG (SM00282)  
Conserved Domain (NCBI)CNTNAP3
DMDM Disease mutations79937
Blocks (Seattle)CNTNAP3
SuperfamilyQ9BZ76
Human Protein AtlasENSG00000106714
Peptide AtlasQ9BZ76
HPRD10842
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ76
IntAct (EBI)Q9BZ76
FunCoupENSG00000106714
BioGRIDCNTNAP3
STRING (EMBL)CNTNAP3
ZODIACCNTNAP3
Ontologies - Pathways
QuickGOQ9BZ76
Ontology : AmiGOextracellular region  plasma membrane  cell adhesion  cell recognition  integral component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  cell adhesion  cell recognition  integral component of membrane  
NDEx NetworkCNTNAP3
Atlas of Cancer Signalling NetworkCNTNAP3
Wikipedia pathwaysCNTNAP3
Orthology - Evolution
OrthoDB79937
GeneTree (enSembl)ENSG00000106714
Phylogenetic Trees/Animal Genes : TreeFamCNTNAP3
HOVERGENQ9BZ76
HOGENOMQ9BZ76
Homologs : HomoloGeneCNTNAP3
Homology/Alignments : Family Browser (UCSC)CNTNAP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTNAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTNAP3
dbVarCNTNAP3
ClinVarCNTNAP3
1000_GenomesCNTNAP3 
Exome Variant ServerCNTNAP3
ExAC (Exome Aggregation Consortium)CNTNAP3 (select the gene name)
Genetic variants : HAPMAP79937
Genomic Variants (DGV)CNTNAP3 [DGVbeta]
DECIPHERCNTNAP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTNAP3 
Mutations
ICGC Data PortalCNTNAP3 
TCGA Data PortalCNTNAP3 
Broad Tumor PortalCNTNAP3
OASIS PortalCNTNAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTNAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTNAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTNAP3
DgiDB (Drug Gene Interaction Database)CNTNAP3
DoCM (Curated mutations)CNTNAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTNAP3 (select a term)
intoGenCNTNAP3
Cancer3DCNTNAP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610517   
Orphanet
MedgenCNTNAP3
Genetic Testing Registry CNTNAP3
NextProtQ9BZ76 [Medical]
TSGene79937
GENETestsCNTNAP3
Target ValidationCNTNAP3
Huge Navigator CNTNAP3 [HugePedia]
snp3D : Map Gene to Disease79937
BioCentury BCIQCNTNAP3
ClinGenCNTNAP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79937
Chemical/Pharm GKB GenePA134963289
Clinical trialCNTNAP3
Miscellaneous
canSAR (ICR)CNTNAP3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTNAP3
EVEXCNTNAP3
GoPubMedCNTNAP3
iHOPCNTNAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 16:58:16 CEST 2017

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