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CNTNAP3B (contactin associated protein-like 3B)

Identity

Other alias-
HGNC (Hugo) CNTNAP3B
LocusID (NCBI) 728577
Atlas_Id 61965
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 41891890 and ends at 42129504 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MLLT10 (10p12.31) / CNTNAP3B (9p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTNAP3B   32035
Cards
Entrez_Gene (NCBI)CNTNAP3B  728577  contactin associated protein-like 3B
Aliases
GeneCards (Weizmann)CNTNAP3B
Ensembl hg19 (Hinxton)ENSG00000154529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154529 [Gene_View]  chr9:41891890-42129504 [Contig_View]  CNTNAP3B [Vega]
ICGC DataPortalENSG00000154529
TCGA cBioPortalCNTNAP3B
AceView (NCBI)CNTNAP3B
Genatlas (Paris)CNTNAP3B
WikiGenes728577
SOURCE (Princeton)CNTNAP3B
Genetics Home Reference (NIH)CNTNAP3B
Genomic and cartography
GoldenPath hg38 (UCSC)CNTNAP3B  -     chr9:41891890-42129504 -  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTNAP3B  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblCNTNAP3B - 9p11.2 [CytoView hg19]  CNTNAP3B - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBICNTNAP3B [Mapview hg19]  CNTNAP3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094831 BX538190
RefSeq transcript (Entrez)NM_001201380
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTNAP3B
Cluster EST : UnigeneHs.722375 [ NCBI ]
CGAP (NCI)Hs.722375
Alternative Splicing GalleryENSG00000154529
Gene ExpressionCNTNAP3B [ NCBI-GEO ]   CNTNAP3B [ EBI - ARRAY_EXPRESS ]   CNTNAP3B [ SEEK ]   CNTNAP3B [ MEM ]
Gene Expression Viewer (FireBrowse)CNTNAP3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728577
GTEX Portal (Tissue expression)CNTNAP3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NU0
Splice isoforms : SwissVarQ96NU0
PhosPhoSitePlusQ96NU0
Domaine pattern : Prosite (Expaxy)EGF_3 (PS50026)    FA%8_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)    FIBRINOGEN_C_2 (PS51406)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)CASPR3    ConA-like_dom    EGF-like_dom    FA58C    Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_dom    Galactose-bd-like    Laminin_G   
Domain families : Pfam (Sanger)F5_F8_type_C (PF00754)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00754    pfam02210   
Domain families : Smart (EMBL)EGF (SM00181)  FA58C (SM00231)  LamG (SM00282)  
Conserved Domain (NCBI)CNTNAP3B
DMDM Disease mutations728577
Blocks (Seattle)CNTNAP3B
SuperfamilyQ96NU0
Human Protein AtlasENSG00000154529
Peptide AtlasQ96NU0
IPIIPI00647097   IPI00255103   IPI00895814   IPI00001245   IPI00645313   IPI00830111   IPI00619905   IPI00739182   IPI00645858   IPI00889519   IPI00643809   IPI00740827   IPI00399050   IPI00869069   IPI00980464   
Protein Interaction databases
DIP (DOE-UCLA)Q96NU0
IntAct (EBI)Q96NU0
FunCoupENSG00000154529
BioGRIDCNTNAP3B
STRING (EMBL)CNTNAP3B
ZODIACCNTNAP3B
Ontologies - Pathways
QuickGOQ96NU0
Ontology : AmiGOcell adhesion  integral component of membrane  
Ontology : EGO-EBIcell adhesion  integral component of membrane  
NDEx NetworkCNTNAP3B
Atlas of Cancer Signalling NetworkCNTNAP3B
Wikipedia pathwaysCNTNAP3B
Orthology - Evolution
OrthoDB728577
GeneTree (enSembl)ENSG00000154529
Phylogenetic Trees/Animal Genes : TreeFamCNTNAP3B
HOVERGENQ96NU0
HOGENOMQ96NU0
Homologs : HomoloGeneCNTNAP3B
Homology/Alignments : Family Browser (UCSC)CNTNAP3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTNAP3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTNAP3B
dbVarCNTNAP3B
ClinVarCNTNAP3B
1000_GenomesCNTNAP3B 
Exome Variant ServerCNTNAP3B
ExAC (Exome Aggregation Consortium)CNTNAP3B (select the gene name)
Genetic variants : HAPMAP728577
Genomic Variants (DGV)CNTNAP3B [DGVbeta]
DECIPHERCNTNAP3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTNAP3B 
Mutations
ICGC Data PortalCNTNAP3B 
TCGA Data PortalCNTNAP3B 
Broad Tumor PortalCNTNAP3B
OASIS PortalCNTNAP3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTNAP3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTNAP3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTNAP3B
DgiDB (Drug Gene Interaction Database)CNTNAP3B
DoCM (Curated mutations)CNTNAP3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTNAP3B (select a term)
intoGenCNTNAP3B
Cancer3DCNTNAP3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCNTNAP3B
Genetic Testing Registry CNTNAP3B
NextProtQ96NU0 [Medical]
TSGene728577
GENETestsCNTNAP3B
Target ValidationCNTNAP3B
Huge Navigator CNTNAP3B [HugePedia]
snp3D : Map Gene to Disease728577
BioCentury BCIQCNTNAP3B
ClinGenCNTNAP3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728577
Chemical/Pharm GKB GenePA142672087
Clinical trialCNTNAP3B
Miscellaneous
canSAR (ICR)CNTNAP3B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTNAP3B
EVEXCNTNAP3B
GoPubMedCNTNAP3B
iHOPCNTNAP3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:06 CEST 2017

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