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CNTNAP4 (contactin associated protein like 4)

Identity

Alias_namescontactin associated protein-like 4
Alias_symbol (synonym)CASPR4
KIAA1763
Other alias
HGNC (Hugo) CNTNAP4
LocusID (NCBI) 85445
Atlas_Id 61967
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 76277217 and ends at 76560750 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTNAP4   18747
Cards
Entrez_Gene (NCBI)CNTNAP4  85445  contactin associated protein like 4
AliasesCASPR4
GeneCards (Weizmann)CNTNAP4
Ensembl hg19 (Hinxton)ENSG00000152910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152910 [Gene_View]  chr16:76277217-76560750 [Contig_View]  CNTNAP4 [Vega]
ICGC DataPortalENSG00000152910
TCGA cBioPortalCNTNAP4
AceView (NCBI)CNTNAP4
Genatlas (Paris)CNTNAP4
WikiGenes85445
SOURCE (Princeton)CNTNAP4
Genetics Home Reference (NIH)CNTNAP4
Genomic and cartography
GoldenPath hg38 (UCSC)CNTNAP4  -     chr16:76277217-76560750 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTNAP4  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblCNTNAP4 - 16q23.1 [CytoView hg19]  CNTNAP4 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICNTNAP4 [Mapview hg19]  CNTNAP4 [Mapview hg38]
OMIM610518   
Gene and transcription
Genbank (Entrez)AB051550 AB100092 AB100093 AB100094 AF463518
RefSeq transcript (Entrez)NM_001322178 NM_001322179 NM_001322180 NM_001322181 NM_001322187 NM_001322188 NM_001322189 NM_001322190 NM_001322191 NM_033401 NM_138994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTNAP4
Cluster EST : UnigeneHs.461389 [ NCBI ]
CGAP (NCI)Hs.461389
Alternative Splicing GalleryENSG00000152910
Gene ExpressionCNTNAP4 [ NCBI-GEO ]   CNTNAP4 [ EBI - ARRAY_EXPRESS ]   CNTNAP4 [ SEEK ]   CNTNAP4 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTNAP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85445
GTEX Portal (Tissue expression)CNTNAP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0A0
Splice isoforms : SwissVarQ9C0A0
PhosPhoSitePlusQ9C0A0
Domaine pattern : Prosite (Expaxy)EGF_3 (PS50026)    FA58C_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)    FIBRINOGEN_C_2 (PS51406)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)CASPR4    ConA-like_dom    EGF-like_dom    FA58C    Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_dom    Galactose-bd-like    Laminin_G   
Domain families : Pfam (Sanger)F5_F8_type_C (PF00754)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00754    pfam02210   
Domain families : Smart (EMBL)EGF (SM00181)  FA58C (SM00231)  LamG (SM00282)  
Conserved Domain (NCBI)CNTNAP4
DMDM Disease mutations85445
Blocks (Seattle)CNTNAP4
PDB (SRS)4NXQ   
PDB (PDBSum)4NXQ   
PDB (IMB)4NXQ   
PDB (RSDB)4NXQ   
Structural Biology KnowledgeBase4NXQ   
SCOP (Structural Classification of Proteins)4NXQ   
CATH (Classification of proteins structures)4NXQ   
SuperfamilyQ9C0A0
Human Protein AtlasENSG00000152910
Peptide AtlasQ9C0A0
HPRD13079
IPIIPI00644276   IPI00216250   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0A0
IntAct (EBI)Q9C0A0
FunCoupENSG00000152910
BioGRIDCNTNAP4
STRING (EMBL)CNTNAP4
ZODIACCNTNAP4
Ontologies - Pathways
QuickGOQ9C0A0
Ontology : AmiGOcell adhesion  integral component of membrane  cell junction  dendrite  regulation of synaptic transmission, dopaminergic  regulation of synaptic transmission, GABAergic  presynaptic membrane  regulation of grooming behavior  
Ontology : EGO-EBIcell adhesion  integral component of membrane  cell junction  dendrite  regulation of synaptic transmission, dopaminergic  regulation of synaptic transmission, GABAergic  presynaptic membrane  regulation of grooming behavior  
NDEx NetworkCNTNAP4
Atlas of Cancer Signalling NetworkCNTNAP4
Wikipedia pathwaysCNTNAP4
Orthology - Evolution
OrthoDB85445
GeneTree (enSembl)ENSG00000152910
Phylogenetic Trees/Animal Genes : TreeFamCNTNAP4
HOVERGENQ9C0A0
HOGENOMQ9C0A0
Homologs : HomoloGeneCNTNAP4
Homology/Alignments : Family Browser (UCSC)CNTNAP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTNAP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTNAP4
dbVarCNTNAP4
ClinVarCNTNAP4
1000_GenomesCNTNAP4 
Exome Variant ServerCNTNAP4
ExAC (Exome Aggregation Consortium)CNTNAP4 (select the gene name)
Genetic variants : HAPMAP85445
Genomic Variants (DGV)CNTNAP4 [DGVbeta]
DECIPHERCNTNAP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTNAP4 
Mutations
ICGC Data PortalCNTNAP4 
TCGA Data PortalCNTNAP4 
Broad Tumor PortalCNTNAP4
OASIS PortalCNTNAP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTNAP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTNAP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTNAP4
DgiDB (Drug Gene Interaction Database)CNTNAP4
DoCM (Curated mutations)CNTNAP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTNAP4 (select a term)
intoGenCNTNAP4
Cancer3DCNTNAP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610518   
Orphanet
MedgenCNTNAP4
Genetic Testing Registry CNTNAP4
NextProtQ9C0A0 [Medical]
TSGene85445
GENETestsCNTNAP4
Huge Navigator CNTNAP4 [HugePedia]
snp3D : Map Gene to Disease85445
BioCentury BCIQCNTNAP4
ClinGenCNTNAP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85445
Chemical/Pharm GKB GenePA134874662
Clinical trialCNTNAP4
Miscellaneous
canSAR (ICR)CNTNAP4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTNAP4
EVEXCNTNAP4
GoPubMedCNTNAP4
iHOPCNTNAP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:27 CEST 2017

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