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CNTNAP5 (contactin associated protein like 5)

Identity

Alias_namescontactin associated protein-like 5
Alias_symbol (synonym)caspr5
FLJ31966
Other alias
HGNC (Hugo) CNTNAP5
LocusID (NCBI) 129684
Atlas_Id 927
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 124025287 and ends at 124915377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTNAP5   18748
Cards
Entrez_Gene (NCBI)CNTNAP5  129684  contactin associated protein like 5
Aliasescaspr5
GeneCards (Weizmann)CNTNAP5
Ensembl hg19 (Hinxton)ENSG00000155052 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155052 [Gene_View]  chr2:124025287-124915377 [Contig_View]  CNTNAP5 [Vega]
ICGC DataPortalENSG00000155052
TCGA cBioPortalCNTNAP5
AceView (NCBI)CNTNAP5
Genatlas (Paris)CNTNAP5
WikiGenes129684
SOURCE (Princeton)CNTNAP5
Genetics Home Reference (NIH)CNTNAP5
Genomic and cartography
GoldenPath hg38 (UCSC)CNTNAP5  -     chr2:124025287-124915377 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTNAP5  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblCNTNAP5 - 2q14.3 [CytoView hg19]  CNTNAP5 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBICNTNAP5 [Mapview hg19]  CNTNAP5 [Mapview hg38]
OMIM610519   
Gene and transcription
Genbank (Entrez)AB077881 AI199572 AK056528 BC148397
RefSeq transcript (Entrez)NM_130773 NM_138996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTNAP5
Cluster EST : UnigeneHs.660653 [ NCBI ]
CGAP (NCI)Hs.660653
Alternative Splicing GalleryENSG00000155052
Gene ExpressionCNTNAP5 [ NCBI-GEO ]   CNTNAP5 [ EBI - ARRAY_EXPRESS ]   CNTNAP5 [ SEEK ]   CNTNAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CNTNAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129684
GTEX Portal (Tissue expression)CNTNAP5
Human Protein AtlasENSG00000155052-CNTNAP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYK1
Splice isoforms : SwissVarQ8WYK1
PhosPhoSitePlusQ8WYK1
Domaine pattern : Prosite (Expaxy)EGF_3 (PS50026)    FA58C_2 (PS01286)    FA58C_3 (PS50022)    FIBRINOGEN_C_2 (PS51406)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)Caspr5    ConA-like_dom    EGF-like_dom    FA58C    Fibrinogen_a/b/g_C_dom    Galactose-bd-like    Laminin_G   
Domain families : Pfam (Sanger)F5_F8_type_C (PF00754)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00754    pfam02210   
Domain families : Smart (EMBL)EGF (SM00181)  FA58C (SM00231)  LamG (SM00282)  
Conserved Domain (NCBI)CNTNAP5
DMDM Disease mutations129684
Blocks (Seattle)CNTNAP5
SuperfamilyQ8WYK1
Human Protein Atlas [tissue]ENSG00000155052-CNTNAP5 [tissue]
Peptide AtlasQ8WYK1
HPRD16732
IPIIPI00292300   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYK1
IntAct (EBI)Q8WYK1
FunCoupENSG00000155052
BioGRIDCNTNAP5
STRING (EMBL)CNTNAP5
ZODIACCNTNAP5
Ontologies - Pathways
QuickGOQ8WYK1
Ontology : AmiGOcell adhesion  integral component of membrane  
Ontology : EGO-EBIcell adhesion  integral component of membrane  
NDEx NetworkCNTNAP5
Atlas of Cancer Signalling NetworkCNTNAP5
Wikipedia pathwaysCNTNAP5
Orthology - Evolution
OrthoDB129684
GeneTree (enSembl)ENSG00000155052
Phylogenetic Trees/Animal Genes : TreeFamCNTNAP5
HOVERGENQ8WYK1
HOGENOMQ8WYK1
Homologs : HomoloGeneCNTNAP5
Homology/Alignments : Family Browser (UCSC)CNTNAP5
Gene fusions - Rearrangements
Tumor Fusion PortalCNTNAP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTNAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTNAP5
dbVarCNTNAP5
ClinVarCNTNAP5
1000_GenomesCNTNAP5 
Exome Variant ServerCNTNAP5
ExAC (Exome Aggregation Consortium)ENSG00000155052
GNOMAD BrowserENSG00000155052
Genetic variants : HAPMAP129684
Genomic Variants (DGV)CNTNAP5 [DGVbeta]
DECIPHERCNTNAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTNAP5 
Mutations
ICGC Data PortalCNTNAP5 
TCGA Data PortalCNTNAP5 
Broad Tumor PortalCNTNAP5
OASIS PortalCNTNAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTNAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTNAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTNAP5
DgiDB (Drug Gene Interaction Database)CNTNAP5
DoCM (Curated mutations)CNTNAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTNAP5 (select a term)
intoGenCNTNAP5
Cancer3DCNTNAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610519   
Orphanet
DisGeNETCNTNAP5
MedgenCNTNAP5
Genetic Testing Registry CNTNAP5
NextProtQ8WYK1 [Medical]
TSGene129684
GENETestsCNTNAP5
Target ValidationCNTNAP5
Huge Navigator CNTNAP5 [HugePedia]
snp3D : Map Gene to Disease129684
BioCentury BCIQCNTNAP5
ClinGenCNTNAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129684
Chemical/Pharm GKB GenePA134898715
Clinical trialCNTNAP5
Miscellaneous
canSAR (ICR)CNTNAP5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTNAP5
EVEXCNTNAP5
GoPubMedCNTNAP5
iHOPCNTNAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:25 CET 2017

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