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CNTROB (centrobin, centriole duplication and spindle assembly protein)

Identity

Alias_namescentrobin
Alias_symbol (synonym)LIP8
PP1221
Other alias
HGNC (Hugo) CNTROB
LocusID (NCBI) 116840
Atlas_Id 53355
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7932124 and ends at 7949919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAP1 (1p34.2) / CNTROB (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CNTROB   29616
Cards
Entrez_Gene (NCBI)CNTROB  116840  centrobin, centriole duplication and spindle assembly protein
AliasesLIP8; PP1221
GeneCards (Weizmann)CNTROB
Ensembl hg19 (Hinxton)ENSG00000170037 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170037 [Gene_View]  chr17:7932124-7949919 [Contig_View]  CNTROB [Vega]
ICGC DataPortalENSG00000170037
TCGA cBioPortalCNTROB
AceView (NCBI)CNTROB
Genatlas (Paris)CNTROB
WikiGenes116840
SOURCE (Princeton)CNTROB
Genetics Home Reference (NIH)CNTROB
Genomic and cartography
GoldenPath hg38 (UCSC)CNTROB  -     chr17:7932124-7949919 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CNTROB  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblCNTROB - 17p13.1 [CytoView hg19]  CNTROB - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBICNTROB [Mapview hg19]  CNTROB [Mapview hg38]
OMIM611425   
Gene and transcription
Genbank (Entrez)AF141344 AF331638 AI494457 AK074847 AK293076
RefSeq transcript (Entrez)NM_001037144 NM_001330124 NM_053051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CNTROB
Cluster EST : UnigeneHs.348012 [ NCBI ]
CGAP (NCI)Hs.348012
Alternative Splicing GalleryENSG00000170037
Gene ExpressionCNTROB [ NCBI-GEO ]   CNTROB [ EBI - ARRAY_EXPRESS ]   CNTROB [ SEEK ]   CNTROB [ MEM ]
Gene Expression Viewer (FireBrowse)CNTROB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116840
GTEX Portal (Tissue expression)CNTROB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N137   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N137  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N137
Splice isoforms : SwissVarQ8N137
PhosPhoSitePlusQ8N137
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CNTROB
DMDM Disease mutations116840
Blocks (Seattle)CNTROB
SuperfamilyQ8N137
Human Protein AtlasENSG00000170037
Peptide AtlasQ8N137
HPRD13991
IPIIPI00295638   IPI00385978   IPI00658082   IPI00465412   IPI00657639   IPI00910032   
Protein Interaction databases
DIP (DOE-UCLA)Q8N137
IntAct (EBI)Q8N137
FunCoupENSG00000170037
BioGRIDCNTROB
STRING (EMBL)CNTROB
ZODIACCNTROB
Ontologies - Pathways
QuickGOQ8N137
Ontology : AmiGOprotein binding  centrosome  centrosome  centriole  cytosol  centriole replication  protein domain specific binding  centrosome separation  mitotic cytokinetic process  
Ontology : EGO-EBIprotein binding  centrosome  centrosome  centriole  cytosol  centriole replication  protein domain specific binding  centrosome separation  mitotic cytokinetic process  
NDEx NetworkCNTROB
Atlas of Cancer Signalling NetworkCNTROB
Wikipedia pathwaysCNTROB
Orthology - Evolution
OrthoDB116840
GeneTree (enSembl)ENSG00000170037
Phylogenetic Trees/Animal Genes : TreeFamCNTROB
HOVERGENQ8N137
HOGENOMQ8N137
Homologs : HomoloGeneCNTROB
Homology/Alignments : Family Browser (UCSC)CNTROB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCNTROB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CNTROB
dbVarCNTROB
ClinVarCNTROB
1000_GenomesCNTROB 
Exome Variant ServerCNTROB
ExAC (Exome Aggregation Consortium)CNTROB (select the gene name)
Genetic variants : HAPMAP116840
Genomic Variants (DGV)CNTROB [DGVbeta]
DECIPHERCNTROB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCNTROB 
Mutations
ICGC Data PortalCNTROB 
TCGA Data PortalCNTROB 
Broad Tumor PortalCNTROB
OASIS PortalCNTROB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCNTROB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCNTROB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CNTROB
DgiDB (Drug Gene Interaction Database)CNTROB
DoCM (Curated mutations)CNTROB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CNTROB (select a term)
intoGenCNTROB
Cancer3DCNTROB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611425   
Orphanet
MedgenCNTROB
Genetic Testing Registry CNTROB
NextProtQ8N137 [Medical]
TSGene116840
GENETestsCNTROB
Target ValidationCNTROB
Huge Navigator CNTROB [HugePedia]
snp3D : Map Gene to Disease116840
BioCentury BCIQCNTROB
ClinGenCNTROB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116840
Chemical/Pharm GKB GenePA143485436
Clinical trialCNTROB
Miscellaneous
canSAR (ICR)CNTROB (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCNTROB
EVEXCNTROB
GoPubMedCNTROB
iHOPCNTROB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:03 CEST 2017

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