Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COA1 (cytochrome c oxidase assembly factor 1 homolog)

Identity

Alias_namesC7orf44
chromosome 7 open reading frame 44
cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ10803
MITRAC15
Other alias
HGNC (Hugo) COA1
LocusID (NCBI) 55744
Atlas_Id 55784
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 43678846 and ends at 43769140 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COA1 (7p13) / HECW1 (7p14.1)COA1 (7p13) / MRPS24 (7p13)FAM60A (12p11.21) / COA1 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA1   21868
Cards
Entrez_Gene (NCBI)COA1  55744  cytochrome c oxidase assembly factor 1 homolog
AliasesC7orf44; MITRAC15
GeneCards (Weizmann)COA1
Ensembl hg19 (Hinxton)ENSG00000106603 [Gene_View]  chr7:43678846-43769140 [Contig_View]  COA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106603 [Gene_View]  chr7:43678846-43769140 [Contig_View]  COA1 [Vega]
ICGC DataPortalENSG00000106603
TCGA cBioPortalCOA1
AceView (NCBI)COA1
Genatlas (Paris)COA1
WikiGenes55744
SOURCE (Princeton)COA1
Genetics Home Reference (NIH)COA1
Genomic and cartography
GoldenPath hg19 (UCSC)COA1  -     chr7:43678846-43769140 -  7p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COA1  -     7p13   [Description]    (hg38-Dec_2013)
EnsemblCOA1 - 7p13 [CytoView hg19]  COA1 - 7p13 [CytoView hg38]
Mapping of homologs : NCBICOA1 [Mapview hg19]  COA1 [Mapview hg38]
OMIM614769   
Gene and transcription
Genbank (Entrez)AK001665 AK021905 AK023007 AK023053 AK097203
RefSeq transcript (Entrez)NM_001321197 NM_001321198 NM_001321199 NM_001321200 NM_001321201 NM_001321202 NM_001321203 NM_001321204 NM_001321205 NM_018224
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)COA1
Cluster EST : UnigeneHs.655165 [ NCBI ]
CGAP (NCI)Hs.655165
Alternative Splicing GalleryENSG00000106603
Gene ExpressionCOA1 [ NCBI-GEO ]   COA1 [ EBI - ARRAY_EXPRESS ]   COA1 [ SEEK ]   COA1 [ MEM ]
Gene Expression Viewer (FireBrowse)COA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55744
GTEX Portal (Tissue expression)COA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZY4
Splice isoforms : SwissVarQ9GZY4
PhosPhoSitePlusQ9GZY4
Domains : Interpro (EBI)Cyt_oxidase_assembly-1   
Domain families : Pfam (Sanger)Coa1 (PF08695)   
Domain families : Pfam (NCBI)pfam08695   
Conserved Domain (NCBI)COA1
DMDM Disease mutations55744
Blocks (Seattle)COA1
SuperfamilyQ9GZY4
Human Protein AtlasENSG00000106603
Peptide AtlasQ9GZY4
HPRD07700
IPIIPI00414548   IPI00925094   IPI00924793   IPI00924471   IPI00924993   IPI00926405   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZY4
IntAct (EBI)Q9GZY4
FunCoupENSG00000106603
BioGRIDCOA1
STRING (EMBL)COA1
ZODIACCOA1
Ontologies - Pathways
QuickGOQ9GZY4
Ontology : AmiGORNA binding  structural constituent of ribosome  cytoplasm  mitochondrion  translation  cytosolic large ribosomal subunit  integral component of mitochondrial inner membrane  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  cytoplasm  mitochondrion  translation  cytosolic large ribosomal subunit  integral component of mitochondrial inner membrane  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkCOA1
Atlas of Cancer Signalling NetworkCOA1
Wikipedia pathwaysCOA1
Orthology - Evolution
OrthoDB55744
GeneTree (enSembl)ENSG00000106603
Phylogenetic Trees/Animal Genes : TreeFamCOA1
HOVERGENQ9GZY4
HOGENOMQ9GZY4
Homologs : HomoloGeneCOA1
Homology/Alignments : Family Browser (UCSC)COA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA1
dbVarCOA1
ClinVarCOA1
1000_GenomesCOA1 
Exome Variant ServerCOA1
ExAC (Exome Aggregation Consortium)COA1 (select the gene name)
Genetic variants : HAPMAP55744
Genomic Variants (DGV)COA1 [DGVbeta]
DECIPHER (Syndromes)7:43678846-43769140  ENSG00000106603
CONAN: Copy Number AnalysisCOA1 
Mutations
ICGC Data PortalCOA1 
TCGA Data PortalCOA1 
Broad Tumor PortalCOA1
OASIS PortalCOA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COA1
DgiDB (Drug Gene Interaction Database)COA1
DoCM (Curated mutations)COA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA1 (select a term)
intoGenCOA1
Cancer3DCOA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614769   
Orphanet
MedgenCOA1
Genetic Testing Registry COA1
NextProtQ9GZY4 [Medical]
TSGene55744
GENETestsCOA1
Huge Navigator COA1 [HugePedia]
snp3D : Map Gene to Disease55744
BioCentury BCIQCOA1
ClinGenCOA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55744
Chemical/Pharm GKB GenePA162380473
Clinical trialCOA1
Miscellaneous
canSAR (ICR)COA1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA1
EVEXCOA1
GoPubMedCOA1
iHOPCOA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:08 CEST 2017

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