Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COA3 (cytochrome c oxidase assembly factor 3)

Identity

Alias_namesCCDC56
coiled-coil domain containing 56
Alias_symbol (synonym)HSPC009
MITRAC12
COX25
Other alias
HGNC (Hugo) COA3
LocusID (NCBI) 28958
Atlas_Id 61969
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42797618 and ends at 42798725 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA3   24990
Cards
Entrez_Gene (NCBI)COA3  28958  cytochrome c oxidase assembly factor 3
AliasesCCDC56; COX25; HSPC009; MITRAC12
GeneCards (Weizmann)COA3
Ensembl hg19 (Hinxton)ENSG00000183978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183978 [Gene_View]  chr17:42797618-42798725 [Contig_View]  COA3 [Vega]
ICGC DataPortalENSG00000183978
TCGA cBioPortalCOA3
AceView (NCBI)COA3
Genatlas (Paris)COA3
WikiGenes28958
SOURCE (Princeton)COA3
Genetics Home Reference (NIH)COA3
Genomic and cartography
GoldenPath hg38 (UCSC)COA3  -     chr17:42797618-42798725 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COA3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblCOA3 - 17q21.2 [CytoView hg19]  COA3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBICOA3 [Mapview hg19]  COA3 [Mapview hg38]
OMIM614775   
Gene and transcription
Genbank (Entrez)AF070665 AK225611 AK290863 AK295023 AL524532
RefSeq transcript (Entrez)NM_001040431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COA3
Cluster EST : UnigeneHs.16059 [ NCBI ]
CGAP (NCI)Hs.16059
Alternative Splicing GalleryENSG00000183978
Gene ExpressionCOA3 [ NCBI-GEO ]   COA3 [ EBI - ARRAY_EXPRESS ]   COA3 [ SEEK ]   COA3 [ MEM ]
Gene Expression Viewer (FireBrowse)COA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28958
GTEX Portal (Tissue expression)COA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2R0
Splice isoforms : SwissVarQ9Y2R0
PhosPhoSitePlusQ9Y2R0
Domains : Interpro (EBI)Coa3   
Domain families : Pfam (Sanger)Coiled-coil_56 (PF09813)   
Domain families : Pfam (NCBI)pfam09813   
Conserved Domain (NCBI)COA3
DMDM Disease mutations28958
Blocks (Seattle)COA3
SuperfamilyQ9Y2R0
Human Protein AtlasENSG00000183978
Peptide AtlasQ9Y2R0
IPIIPI00022277   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2R0
IntAct (EBI)Q9Y2R0
FunCoupENSG00000183978
BioGRIDCOA3
STRING (EMBL)COA3
ZODIACCOA3
Ontologies - Pathways
QuickGOQ9Y2R0
Ontology : AmiGOprotein binding  mitochondrion  integral component of mitochondrial inner membrane  mitochondrial respiratory chain complex IV assembly  positive regulation of mitochondrial translation  
Ontology : EGO-EBIprotein binding  mitochondrion  integral component of mitochondrial inner membrane  mitochondrial respiratory chain complex IV assembly  positive regulation of mitochondrial translation  
NDEx NetworkCOA3
Atlas of Cancer Signalling NetworkCOA3
Wikipedia pathwaysCOA3
Orthology - Evolution
OrthoDB28958
GeneTree (enSembl)ENSG00000183978
Phylogenetic Trees/Animal Genes : TreeFamCOA3
HOVERGENQ9Y2R0
HOGENOMQ9Y2R0
Homologs : HomoloGeneCOA3
Homology/Alignments : Family Browser (UCSC)COA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA3
dbVarCOA3
ClinVarCOA3
1000_GenomesCOA3 
Exome Variant ServerCOA3
ExAC (Exome Aggregation Consortium)COA3 (select the gene name)
Genetic variants : HAPMAP28958
Genomic Variants (DGV)COA3 [DGVbeta]
DECIPHERCOA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOA3 
Mutations
ICGC Data PortalCOA3 
TCGA Data PortalCOA3 
Broad Tumor PortalCOA3
OASIS PortalCOA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COA3
DgiDB (Drug Gene Interaction Database)COA3
DoCM (Curated mutations)COA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA3 (select a term)
intoGenCOA3
Cancer3DCOA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614775   
Orphanet19799   
MedgenCOA3
Genetic Testing Registry COA3
NextProtQ9Y2R0 [Medical]
TSGene28958
GENETestsCOA3
Target ValidationCOA3
Huge Navigator COA3 [HugePedia]
snp3D : Map Gene to Disease28958
BioCentury BCIQCOA3
ClinGenCOA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28958
Chemical/Pharm GKB GenePA142672172
Clinical trialCOA3
Miscellaneous
canSAR (ICR)COA3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA3
EVEXCOA3
GoPubMedCOA3
iHOPCOA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:07 CEST 2017

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