Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COA4 (cytochrome c oxidase assembly factor 4 homolog)

Identity

Alias_namesCHCHD8
coiled-coil-helix-coiled-coil-helix domain containing 8
cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
Alias_symbol (synonym)E2IG2
CMC3
Other alias
HGNC (Hugo) COA4
LocusID (NCBI) 51287
Atlas_Id 61970
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 73872668 and ends at 73876845 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA4   24604
Cards
Entrez_Gene (NCBI)COA4  51287  cytochrome c oxidase assembly factor 4 homolog
AliasesCHCHD8; CMC3; E2IG2
GeneCards (Weizmann)COA4
Ensembl hg19 (Hinxton)ENSG00000181924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181924 [Gene_View]  chr11:73872668-73876845 [Contig_View]  COA4 [Vega]
ICGC DataPortalENSG00000181924
TCGA cBioPortalCOA4
AceView (NCBI)COA4
Genatlas (Paris)COA4
WikiGenes51287
SOURCE (Princeton)COA4
Genetics Home Reference (NIH)COA4
Genomic and cartography
GoldenPath hg38 (UCSC)COA4  -     chr11:73872668-73876845 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COA4  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblCOA4 - 11q13.4 [CytoView hg19]  COA4 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBICOA4 [Mapview hg19]  COA4 [Mapview hg38]
OMIM608016   
Gene and transcription
Genbank (Entrez)AF242180 AK000434 AK314104 AL359618 AM392802
RefSeq transcript (Entrez)NM_016565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COA4
Cluster EST : UnigeneHs.475387 [ NCBI ]
CGAP (NCI)Hs.475387
Alternative Splicing GalleryENSG00000181924
Gene ExpressionCOA4 [ NCBI-GEO ]   COA4 [ EBI - ARRAY_EXPRESS ]   COA4 [ SEEK ]   COA4 [ MEM ]
Gene Expression Viewer (FireBrowse)COA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51287
GTEX Portal (Tissue expression)COA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYJ1
Splice isoforms : SwissVarQ9NYJ1
PhosPhoSitePlusQ9NYJ1
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COA4
DMDM Disease mutations51287
Blocks (Seattle)COA4
SuperfamilyQ9NYJ1
Human Protein AtlasENSG00000181924
Peptide AtlasQ9NYJ1
HPRD06421
IPIIPI00878815   IPI00009817   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYJ1
IntAct (EBI)Q9NYJ1
FunCoupENSG00000181924
BioGRIDCOA4
STRING (EMBL)COA4
ZODIACCOA4
Ontologies - Pathways
QuickGOQ9NYJ1
Ontology : AmiGOmitochondrial intermembrane space  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBImitochondrial intermembrane space  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkCOA4
Atlas of Cancer Signalling NetworkCOA4
Wikipedia pathwaysCOA4
Orthology - Evolution
OrthoDB51287
GeneTree (enSembl)ENSG00000181924
Phylogenetic Trees/Animal Genes : TreeFamCOA4
HOVERGENQ9NYJ1
HOGENOMQ9NYJ1
Homologs : HomoloGeneCOA4
Homology/Alignments : Family Browser (UCSC)COA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA4
dbVarCOA4
ClinVarCOA4
1000_GenomesCOA4 
Exome Variant ServerCOA4
ExAC (Exome Aggregation Consortium)COA4 (select the gene name)
Genetic variants : HAPMAP51287
Genomic Variants (DGV)COA4 [DGVbeta]
DECIPHERCOA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOA4 
Mutations
ICGC Data PortalCOA4 
TCGA Data PortalCOA4 
Broad Tumor PortalCOA4
OASIS PortalCOA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COA4
DgiDB (Drug Gene Interaction Database)COA4
DoCM (Curated mutations)COA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA4 (select a term)
intoGenCOA4
Cancer3DCOA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608016   
Orphanet
MedgenCOA4
Genetic Testing Registry COA4
NextProtQ9NYJ1 [Medical]
TSGene51287
GENETestsCOA4
Target ValidationCOA4
Huge Navigator COA4 [HugePedia]
snp3D : Map Gene to Disease51287
BioCentury BCIQCOA4
ClinGenCOA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51287
Chemical/Pharm GKB GenePA142672121
Clinical trialCOA4
Miscellaneous
canSAR (ICR)COA4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA4
EVEXCOA4
GoPubMedCOA4
iHOPCOA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:07 CEST 2017

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