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COA5 (cytochrome c oxidase assembly factor 5)

Identity

Alias_namesC2orf64
chromosome 2 open reading frame 64
Alias_symbol (synonym)MGC52110
FLJ27524
Pet191
Other alias6330578E17Rik
CEMCOX3
HGNC (Hugo) COA5
LocusID (NCBI) 493753
Atlas_Id 61971
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 98599323 and ends at 98608518 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA5   33848
Cards
Entrez_Gene (NCBI)COA5  493753  cytochrome c oxidase assembly factor 5
Aliases6330578E17Rik; C2orf64; CEMCOX3; Pet191
GeneCards (Weizmann)COA5
Ensembl hg19 (Hinxton)ENSG00000183513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183513 [Gene_View]  chr2:98599323-98608518 [Contig_View]  COA5 [Vega]
ICGC DataPortalENSG00000183513
TCGA cBioPortalCOA5
AceView (NCBI)COA5
Genatlas (Paris)COA5
WikiGenes493753
SOURCE (Princeton)COA5
Genetics Home Reference (NIH)COA5
Genomic and cartography
GoldenPath hg38 (UCSC)COA5  -     chr2:98599323-98608518 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COA5  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblCOA5 - 2q11.2 [CytoView hg19]  COA5 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBICOA5 [Mapview hg19]  COA5 [Mapview hg38]
OMIM220110   613920   616500   
Gene and transcription
Genbank (Entrez)AI002968 AK131034 BC047722 DA214157 HQ257887
RefSeq transcript (Entrez)NM_001008215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COA5
Cluster EST : UnigeneHs.596537 [ NCBI ]
CGAP (NCI)Hs.596537
Alternative Splicing GalleryENSG00000183513
Gene ExpressionCOA5 [ NCBI-GEO ]   COA5 [ EBI - ARRAY_EXPRESS ]   COA5 [ SEEK ]   COA5 [ MEM ]
Gene Expression Viewer (FireBrowse)COA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493753
GTEX Portal (Tissue expression)COA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WW8
Splice isoforms : SwissVarQ86WW8
PhosPhoSitePlusQ86WW8
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domains : Interpro (EBI)Cyt_c_oxidase_assmbl_Pet191   
Domain families : Pfam (Sanger)Pet191_N (PF10203)   
Domain families : Pfam (NCBI)pfam10203   
Conserved Domain (NCBI)COA5
DMDM Disease mutations493753
Blocks (Seattle)COA5
SuperfamilyQ86WW8
Human Protein AtlasENSG00000183513
Peptide AtlasQ86WW8
HPRD17563
IPIIPI00400948   IPI00916639   
Protein Interaction databases
DIP (DOE-UCLA)Q86WW8
IntAct (EBI)Q86WW8
FunCoupENSG00000183513
BioGRIDCOA5
STRING (EMBL)COA5
ZODIACCOA5
Ontologies - Pathways
QuickGOQ86WW8
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkCOA5
Atlas of Cancer Signalling NetworkCOA5
Wikipedia pathwaysCOA5
Orthology - Evolution
OrthoDB493753
GeneTree (enSembl)ENSG00000183513
Phylogenetic Trees/Animal Genes : TreeFamCOA5
HOVERGENQ86WW8
HOGENOMQ86WW8
Homologs : HomoloGeneCOA5
Homology/Alignments : Family Browser (UCSC)COA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA5
dbVarCOA5
ClinVarCOA5
1000_GenomesCOA5 
Exome Variant ServerCOA5
ExAC (Exome Aggregation Consortium)COA5 (select the gene name)
Genetic variants : HAPMAP493753
Genomic Variants (DGV)COA5 [DGVbeta]
DECIPHERCOA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOA5 
Mutations
ICGC Data PortalCOA5 
TCGA Data PortalCOA5 
Broad Tumor PortalCOA5
OASIS PortalCOA5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COA5
DgiDB (Drug Gene Interaction Database)COA5
DoCM (Curated mutations)COA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA5 (select a term)
intoGenCOA5
Cancer3DCOA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM220110    613920    616500   
Orphanet3379   
MedgenCOA5
Genetic Testing Registry COA5
NextProtQ86WW8 [Medical]
TSGene493753
GENETestsCOA5
Target ValidationCOA5
Huge Navigator COA5 [HugePedia]
snp3D : Map Gene to Disease493753
BioCentury BCIQCOA5
ClinGenCOA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493753
Chemical/Pharm GKB GenePA162379390
Clinical trialCOA5
Miscellaneous
canSAR (ICR)COA5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA5
EVEXCOA5
GoPubMedCOA5
iHOPCOA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:08 CEST 2017

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