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COA6 (cytochrome c oxidase assembly factor 6)

Identity

Alias_namesC1orf31
chromosome 1 open reading frame 31
cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)
Other aliasCEMCOX4
HGNC (Hugo) COA6
LocusID (NCBI) 388753
Atlas_Id 61972
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 234373683 and ends at 234384049 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA6   18025
Cards
Entrez_Gene (NCBI)COA6  388753  cytochrome c oxidase assembly factor 6
AliasesC1orf31; CEMCOX4
GeneCards (Weizmann)COA6
Ensembl hg19 (Hinxton)ENSG00000168275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168275 [Gene_View]  chr1:234373683-234384049 [Contig_View]  COA6 [Vega]
ICGC DataPortalENSG00000168275
TCGA cBioPortalCOA6
AceView (NCBI)COA6
Genatlas (Paris)COA6
WikiGenes388753
SOURCE (Princeton)COA6
Genetics Home Reference (NIH)COA6
Genomic and cartography
GoldenPath hg38 (UCSC)COA6  -     chr1:234373683-234384049 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COA6  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblCOA6 - 1q42.2 [CytoView hg19]  COA6 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBICOA6 [Mapview hg19]  COA6 [Mapview hg38]
OMIM614772   616501   
Gene and transcription
Genbank (Entrez)AM393319 AM393778 BC025793 BC035925 BC052810
RefSeq transcript (Entrez)NM_001012985 NM_001206641 NM_001301733
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COA6
Cluster EST : UnigeneHs.23198 [ NCBI ]
CGAP (NCI)Hs.23198
Alternative Splicing GalleryENSG00000168275
Gene ExpressionCOA6 [ NCBI-GEO ]   COA6 [ EBI - ARRAY_EXPRESS ]   COA6 [ SEEK ]   COA6 [ MEM ]
Gene Expression Viewer (FireBrowse)COA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388753
GTEX Portal (Tissue expression)COA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTJ3
Splice isoforms : SwissVarQ5JTJ3
PhosPhoSitePlusQ5JTJ3
Domaine pattern : Prosite (Expaxy)CHCH (PS51808)   
Domains : Interpro (EBI)Cyt_c_oxidase_su6B   
Domain families : Pfam (Sanger)COX6B (PF02297)   
Domain families : Pfam (NCBI)pfam02297   
Conserved Domain (NCBI)COA6
DMDM Disease mutations388753
Blocks (Seattle)COA6
SuperfamilyQ5JTJ3
Human Protein AtlasENSG00000168275
Peptide AtlasQ5JTJ3
HPRD18535
IPIIPI00045660   IPI00830136   IPI00646750   IPI00552131   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTJ3
IntAct (EBI)Q5JTJ3
FunCoupENSG00000168275
BioGRIDCOA6
STRING (EMBL)COA6
ZODIACCOA6
Ontologies - Pathways
QuickGOQ5JTJ3
Ontology : AmiGORNA binding  cytochrome-c oxidase activity  copper ion binding  protein binding  mitochondrion  mitochondrial intermembrane space  plasma membrane  respiratory chain complex IV assembly  respiratory chain complex IV assembly  plasma membrane ATP synthesis coupled electron transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBIRNA binding  cytochrome-c oxidase activity  copper ion binding  protein binding  mitochondrion  mitochondrial intermembrane space  plasma membrane  respiratory chain complex IV assembly  respiratory chain complex IV assembly  plasma membrane ATP synthesis coupled electron transport  hydrogen ion transmembrane transport  
NDEx NetworkCOA6
Atlas of Cancer Signalling NetworkCOA6
Wikipedia pathwaysCOA6
Orthology - Evolution
OrthoDB388753
GeneTree (enSembl)ENSG00000168275
Phylogenetic Trees/Animal Genes : TreeFamCOA6
HOVERGENQ5JTJ3
HOGENOMQ5JTJ3
Homologs : HomoloGeneCOA6
Homology/Alignments : Family Browser (UCSC)COA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA6
dbVarCOA6
ClinVarCOA6
1000_GenomesCOA6 
Exome Variant ServerCOA6
ExAC (Exome Aggregation Consortium)COA6 (select the gene name)
Genetic variants : HAPMAP388753
Genomic Variants (DGV)COA6 [DGVbeta]
DECIPHERCOA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOA6 
Mutations
ICGC Data PortalCOA6 
TCGA Data PortalCOA6 
Broad Tumor PortalCOA6
OASIS PortalCOA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COA6
DgiDB (Drug Gene Interaction Database)COA6
DoCM (Curated mutations)COA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA6 (select a term)
intoGenCOA6
Cancer3DCOA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614772    616501   
Orphanet3379   
MedgenCOA6
Genetic Testing Registry COA6
NextProtQ5JTJ3 [Medical]
TSGene388753
GENETestsCOA6
Target ValidationCOA6
Huge Navigator COA6 [HugePedia]
snp3D : Map Gene to Disease388753
BioCentury BCIQCOA6
ClinGenCOA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388753
Chemical/Pharm GKB GenePA25617
Clinical trialCOA6
Miscellaneous
canSAR (ICR)COA6 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA6
EVEXCOA6
GoPubMedCOA6
iHOPCOA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:08 CEST 2017

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