Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COA7 (cytochrome c oxidase assembly factor 7 (putative))

Identity

Alias_namesC1orf163
SELRC1
chromosome 1 open reading frame 163
Sel1 repeat containing 1
cytochrome c oxidase assembly factor 7
Alias_symbol (synonym)FLJ12439
RESA1
Other alias
HGNC (Hugo) COA7
LocusID (NCBI) 65260
Atlas_Id 61973
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52686342 and ends at 52698366 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COA7   25716
Cards
Entrez_Gene (NCBI)COA7  65260  cytochrome c oxidase assembly factor 7 (putative)
AliasesC1orf163; RESA1; SELRC1
GeneCards (Weizmann)COA7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:52686342-52698366 [Contig_View]  COA7 [Vega]
TCGA cBioPortalCOA7
AceView (NCBI)COA7
Genatlas (Paris)COA7
WikiGenes65260
SOURCE (Princeton)COA7
Genetics Home Reference (NIH)COA7
Genomic and cartography
GoldenPath hg38 (UCSC)COA7  -     chr1:52686342-52698366 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COA7  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblCOA7 - 1p32.3 [CytoView hg19]  COA7 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBICOA7 [Mapview hg19]  COA7 [Mapview hg38]
OMIM615623   
Gene and transcription
Genbank (Entrez)AK022501 AK023237 AK225041 AK225087 BC005992
RefSeq transcript (Entrez)NM_023077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COA7
Cluster EST : UnigeneHs.349905 [ NCBI ]
CGAP (NCI)Hs.349905
Gene ExpressionCOA7 [ NCBI-GEO ]   COA7 [ EBI - ARRAY_EXPRESS ]   COA7 [ SEEK ]   COA7 [ MEM ]
Gene Expression Viewer (FireBrowse)COA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65260
GTEX Portal (Tissue expression)COA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BR5
Splice isoforms : SwissVarQ96BR5
PhosPhoSitePlusQ96BR5
Domains : Interpro (EBI)Sel1-like    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Sel1 (PF08238)   
Domain families : Pfam (NCBI)pfam08238   
Domain families : Smart (EMBL)SEL1 (SM00671)  
Conserved Domain (NCBI)COA7
DMDM Disease mutations65260
Blocks (Seattle)COA7
SuperfamilyQ96BR5
Peptide AtlasQ96BR5
HPRD07769
IPIIPI00303753   
Protein Interaction databases
DIP (DOE-UCLA)Q96BR5
IntAct (EBI)Q96BR5
BioGRIDCOA7
STRING (EMBL)COA7
ZODIACCOA7
Ontologies - Pathways
QuickGOQ96BR5
Ontology : AmiGOnucleus  mitochondrion  mitochondrial intermembrane space  
Ontology : EGO-EBInucleus  mitochondrion  mitochondrial intermembrane space  
NDEx NetworkCOA7
Atlas of Cancer Signalling NetworkCOA7
Wikipedia pathwaysCOA7
Orthology - Evolution
OrthoDB65260
Phylogenetic Trees/Animal Genes : TreeFamCOA7
HOVERGENQ96BR5
HOGENOMQ96BR5
Homologs : HomoloGeneCOA7
Homology/Alignments : Family Browser (UCSC)COA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COA7
dbVarCOA7
ClinVarCOA7
1000_GenomesCOA7 
Exome Variant ServerCOA7
ExAC (Exome Aggregation Consortium)COA7 (select the gene name)
Genetic variants : HAPMAP65260
Genomic Variants (DGV)COA7 [DGVbeta]
DECIPHERCOA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOA7 
Mutations
ICGC Data PortalCOA7 
TCGA Data PortalCOA7 
Broad Tumor PortalCOA7
OASIS PortalCOA7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOA7
BioMutasearch COA7
DgiDB (Drug Gene Interaction Database)COA7
DoCM (Curated mutations)COA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COA7 (select a term)
intoGenCOA7
Cancer3DCOA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615623   
Orphanet
MedgenCOA7
Genetic Testing Registry COA7
NextProtQ96BR5 [Medical]
TSGene65260
GENETestsCOA7
Target ValidationCOA7
Huge Navigator COA7 [HugePedia]
snp3D : Map Gene to Disease65260
BioCentury BCIQCOA7
ClinGenCOA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65260
Chemical/Pharm GKB GenePA142672414
Clinical trialCOA7
Miscellaneous
canSAR (ICR)COA7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOA7
EVEXCOA7
GoPubMedCOA7
iHOPCOA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:08 CEST 2017

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