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COG2 (component of oligomeric golgi complex 2)

Identity

Alias_namesLDLC
low density lipoprotein receptor defect C complementing
Other alias
HGNC (Hugo) COG2
LocusID (NCBI) 22796
Atlas_Id 61976
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 230778202 and ends at 230829731 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COG2 (1q42.2) / PCNX2 (1q42.2)PCNX2 (1q42.2) / COG2 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG2   6546
Cards
Entrez_Gene (NCBI)COG2  22796  component of oligomeric golgi complex 2
AliasesLDLC
GeneCards (Weizmann)COG2
Ensembl hg19 (Hinxton)ENSG00000135775 [Gene_View]  chr1:230778202-230829731 [Contig_View]  COG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135775 [Gene_View]  chr1:230778202-230829731 [Contig_View]  COG2 [Vega]
ICGC DataPortalENSG00000135775
TCGA cBioPortalCOG2
AceView (NCBI)COG2
Genatlas (Paris)COG2
WikiGenes22796
SOURCE (Princeton)COG2
Genetics Home Reference (NIH)COG2
Genomic and cartography
GoldenPath hg19 (UCSC)COG2  -     chr1:230778202-230829731 +  1q42.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COG2  -     1q42.2   [Description]    (hg38-Dec_2013)
EnsemblCOG2 - 1q42.2 [CytoView hg19]  COG2 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBICOG2 [Mapview hg19]  COG2 [Mapview hg38]
OMIM606974   
Gene and transcription
Genbank (Entrez)AK295251 AK302288 AK302791 AK312678 AL832190
RefSeq transcript (Entrez)NM_001145036 NM_007357
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)COG2
Cluster EST : UnigeneHs.211800 [ NCBI ]
CGAP (NCI)Hs.211800
Alternative Splicing GalleryENSG00000135775
Gene ExpressionCOG2 [ NCBI-GEO ]   COG2 [ EBI - ARRAY_EXPRESS ]   COG2 [ SEEK ]   COG2 [ MEM ]
Gene Expression Viewer (FireBrowse)COG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22796
GTEX Portal (Tissue expression)COG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14746   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14746  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14746
Splice isoforms : SwissVarQ14746
PhosPhoSitePlusQ14746
Domains : Interpro (EBI)COG2    COG_complex_COG2_C    COG_su2_N   
Domain families : Pfam (Sanger)COG2 (PF06148)    DUF3510 (PF12022)   
Domain families : Pfam (NCBI)pfam06148    pfam12022   
Conserved Domain (NCBI)COG2
DMDM Disease mutations22796
Blocks (Seattle)COG2
SuperfamilyQ14746
Human Protein AtlasENSG00000135775
Peptide AtlasQ14746
HPRD07372
IPIIPI00000057   IPI01012021   IPI00922762   IPI01009422   IPI00643424   
Protein Interaction databases
DIP (DOE-UCLA)Q14746
IntAct (EBI)Q14746
FunCoupENSG00000135775
BioGRIDCOG2
STRING (EMBL)COG2
ZODIACCOG2
Ontologies - Pathways
QuickGOQ14746
Ontology : AmiGOGolgi membrane  protein binding  Golgi stack  cytosol  protein glycosylation  intracellular protein transport  intra-Golgi vesicle-mediated transport  Golgi organization  protein transporter activity  oligosaccharide biosynthetic process  Golgi transport complex  Golgi transport complex  protein complex binding  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi stack  cytosol  protein glycosylation  intracellular protein transport  intra-Golgi vesicle-mediated transport  Golgi organization  protein transporter activity  oligosaccharide biosynthetic process  Golgi transport complex  Golgi transport complex  protein complex binding  
NDEx NetworkCOG2
Atlas of Cancer Signalling NetworkCOG2
Wikipedia pathwaysCOG2
Orthology - Evolution
OrthoDB22796
GeneTree (enSembl)ENSG00000135775
Phylogenetic Trees/Animal Genes : TreeFamCOG2
HOVERGENQ14746
HOGENOMQ14746
Homologs : HomoloGeneCOG2
Homology/Alignments : Family Browser (UCSC)COG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG2
dbVarCOG2
ClinVarCOG2
1000_GenomesCOG2 
Exome Variant ServerCOG2
ExAC (Exome Aggregation Consortium)COG2 (select the gene name)
Genetic variants : HAPMAP22796
Genomic Variants (DGV)COG2 [DGVbeta]
DECIPHER (Syndromes)1:230778202-230829731  ENSG00000135775
CONAN: Copy Number AnalysisCOG2 
Mutations
ICGC Data PortalCOG2 
TCGA Data PortalCOG2 
Broad Tumor PortalCOG2
OASIS PortalCOG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COG2
DgiDB (Drug Gene Interaction Database)COG2
DoCM (Curated mutations)COG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG2 (select a term)
intoGenCOG2
Cancer3DCOG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606974   
Orphanet23320   
MedgenCOG2
Genetic Testing Registry COG2
NextProtQ14746 [Medical]
TSGene22796
GENETestsCOG2
Huge Navigator COG2 [HugePedia]
snp3D : Map Gene to Disease22796
BioCentury BCIQCOG2
ClinGenCOG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22796
Chemical/Pharm GKB GenePA26697
Clinical trialCOG2
Miscellaneous
canSAR (ICR)COG2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG2
EVEXCOG2
GoPubMedCOG2
iHOPCOG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:56 CET 2017

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