Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COG3 (component of oligomeric golgi complex 3)

Identity

Alias_symbol (synonym)SEC34
Other alias
HGNC (Hugo) COG3
LocusID (NCBI) 83548
Atlas_Id 61977
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 45464895 and ends at 45536698 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCNY (10p11.21) / COG3 (13q14.13)COG3 (13q14.13) / AGA (4q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG3   18619
Cards
Entrez_Gene (NCBI)COG3  83548  component of oligomeric golgi complex 3
AliasesSEC34
GeneCards (Weizmann)COG3
Ensembl hg19 (Hinxton)ENSG00000136152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136152 [Gene_View]  chr13:45464895-45536698 [Contig_View]  COG3 [Vega]
ICGC DataPortalENSG00000136152
TCGA cBioPortalCOG3
AceView (NCBI)COG3
Genatlas (Paris)COG3
WikiGenes83548
SOURCE (Princeton)COG3
Genetics Home Reference (NIH)COG3
Genomic and cartography
GoldenPath hg38 (UCSC)COG3  -     chr13:45464895-45536698 +  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COG3  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblCOG3 - 13q14.13 [CytoView hg19]  COG3 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBICOG3 [Mapview hg19]  COG3 [Mapview hg38]
OMIM606975   
Gene and transcription
Genbank (Entrez)AF111707 AF131829 AF332595 AF349676 AK026305
RefSeq transcript (Entrez)NM_001204476 NM_031431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COG3
Cluster EST : UnigeneHs.507948 [ NCBI ]
CGAP (NCI)Hs.507948
Alternative Splicing GalleryENSG00000136152
Gene ExpressionCOG3 [ NCBI-GEO ]   COG3 [ EBI - ARRAY_EXPRESS ]   COG3 [ SEEK ]   COG3 [ MEM ]
Gene Expression Viewer (FireBrowse)COG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83548
GTEX Portal (Tissue expression)COG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JB2
Splice isoforms : SwissVarQ96JB2
PhosPhoSitePlusQ96JB2
Domains : Interpro (EBI)COG_su3   
Domain families : Pfam (Sanger)Sec34 (PF04136)   
Domain families : Pfam (NCBI)pfam04136   
Conserved Domain (NCBI)COG3
DMDM Disease mutations83548
Blocks (Seattle)COG3
SuperfamilyQ96JB2
Human Protein AtlasENSG00000136152
Peptide AtlasQ96JB2
HPRD08443
IPIIPI00414858   IPI00555771   IPI00152580   
Protein Interaction databases
DIP (DOE-UCLA)Q96JB2
IntAct (EBI)Q96JB2
FunCoupENSG00000136152
BioGRIDCOG3
STRING (EMBL)COG3
ZODIACCOG3
Ontologies - Pathways
QuickGOQ96JB2
Ontology : AmiGOGolgi membrane  retrograde transport, vesicle recycling within Golgi  protein binding  Golgi apparatus  cis-Golgi network  protein glycosylation  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  Golgi organization  Golgi organization  protein transporter activity  Golgi transport complex  Golgi cisterna membrane  trans-Golgi network membrane  protein localization to organelle  protein stabilization  
Ontology : EGO-EBIGolgi membrane  retrograde transport, vesicle recycling within Golgi  protein binding  Golgi apparatus  cis-Golgi network  protein glycosylation  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  intra-Golgi vesicle-mediated transport  Golgi organization  Golgi organization  protein transporter activity  Golgi transport complex  Golgi cisterna membrane  trans-Golgi network membrane  protein localization to organelle  protein stabilization  
NDEx NetworkCOG3
Atlas of Cancer Signalling NetworkCOG3
Wikipedia pathwaysCOG3
Orthology - Evolution
OrthoDB83548
GeneTree (enSembl)ENSG00000136152
Phylogenetic Trees/Animal Genes : TreeFamCOG3
HOVERGENQ96JB2
HOGENOMQ96JB2
Homologs : HomoloGeneCOG3
Homology/Alignments : Family Browser (UCSC)COG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG3
dbVarCOG3
ClinVarCOG3
1000_GenomesCOG3 
Exome Variant ServerCOG3
ExAC (Exome Aggregation Consortium)COG3 (select the gene name)
Genetic variants : HAPMAP83548
Genomic Variants (DGV)COG3 [DGVbeta]
DECIPHERCOG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOG3 
Mutations
ICGC Data PortalCOG3 
TCGA Data PortalCOG3 
Broad Tumor PortalCOG3
OASIS PortalCOG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COG3
DgiDB (Drug Gene Interaction Database)COG3
DoCM (Curated mutations)COG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG3 (select a term)
intoGenCOG3
Cancer3DCOG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606975   
Orphanet
MedgenCOG3
Genetic Testing Registry COG3
NextProtQ96JB2 [Medical]
TSGene83548
GENETestsCOG3
Target ValidationCOG3
Huge Navigator COG3 [HugePedia]
snp3D : Map Gene to Disease83548
BioCentury BCIQCOG3
ClinGenCOG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83548
Chemical/Pharm GKB GenePA38602
Clinical trialCOG3
Miscellaneous
canSAR (ICR)COG3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG3
EVEXCOG3
GoPubMedCOG3
iHOPCOG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:09 CEST 2017

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