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COG4 (component of oligomeric golgi complex 4)

Identity

Alias_symbol (synonym)COD1
DKFZP586E1519
Other aliasCDG2J
HGNC (Hugo) COG4
LocusID (NCBI) 25839
Atlas_Id 56464
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70480569 and ends at 70523554 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AARS (16q22.1) / COG4 (16q22.1)COG4 (16q22.1) / COG4 (16q22.1)COG4 (16q22.1) / JADE1 (4q28.2)
COG4 (16q22.1) / VAC14 (16q22.1)GLG1 (16q23.1) / COG4 (16q22.1)SF3B3 (16q22.1) / COG4 (16q22.1)
ST3GAL2 (16q22.1) / COG4 (16q22.1)TERF2 (16q22.1) / COG4 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG4   18620
Cards
Entrez_Gene (NCBI)COG4  25839  component of oligomeric golgi complex 4
AliasesCDG2J; COD1
GeneCards (Weizmann)COG4
Ensembl hg19 (Hinxton)ENSG00000103051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103051 [Gene_View]  chr16:70480569-70523554 [Contig_View]  COG4 [Vega]
ICGC DataPortalENSG00000103051
TCGA cBioPortalCOG4
AceView (NCBI)COG4
Genatlas (Paris)COG4
WikiGenes25839
SOURCE (Princeton)COG4
Genetics Home Reference (NIH)COG4
Genomic and cartography
GoldenPath hg38 (UCSC)COG4  -     chr16:70480569-70523554 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COG4  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCOG4 - 16q22.1 [CytoView hg19]  COG4 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICOG4 [Mapview hg19]  COG4 [Mapview hg38]
OMIM606976   613489   
Gene and transcription
Genbank (Entrez)AB088369 AK022874 AK026435 AK096557 AK293235
RefSeq transcript (Entrez)NM_001195139 NM_015386
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COG4
Cluster EST : UnigeneHs.208680 [ NCBI ]
CGAP (NCI)Hs.208680
Alternative Splicing GalleryENSG00000103051
Gene ExpressionCOG4 [ NCBI-GEO ]   COG4 [ EBI - ARRAY_EXPRESS ]   COG4 [ SEEK ]   COG4 [ MEM ]
Gene Expression Viewer (FireBrowse)COG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25839
GTEX Portal (Tissue expression)COG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9E3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9E3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9E3
Splice isoforms : SwissVarQ9H9E3
PhosPhoSitePlusQ9H9E3
Domains : Interpro (EBI)COG_su4   
Domain families : Pfam (Sanger)COG4 (PF08318)   
Domain families : Pfam (NCBI)pfam08318   
Domain families : Smart (EMBL)Cog4 (SM00762)  
Conserved Domain (NCBI)COG4
DMDM Disease mutations25839
Blocks (Seattle)COG4
PDB (SRS)3HR0   
PDB (PDBSum)3HR0   
PDB (IMB)3HR0   
PDB (RSDB)3HR0   
Structural Biology KnowledgeBase3HR0   
SCOP (Structural Classification of Proteins)3HR0   
CATH (Classification of proteins structures)3HR0   
SuperfamilyQ9H9E3
Human Protein AtlasENSG00000103051
Peptide AtlasQ9H9E3
HPRD08444
IPIIPI00220800   IPI01012765   IPI00294999   IPI00871406   IPI00149849   IPI01020815   IPI00982937   IPI00981103   IPI00978399   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9E3
IntAct (EBI)Q9H9E3
FunCoupENSG00000103051
BioGRIDCOG4
STRING (EMBL)COG4
ZODIACCOG4
Ontologies - Pathways
QuickGOQ9H9E3
Ontology : AmiGOGolgi membrane  retrograde transport, vesicle recycling within Golgi  protein binding  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  protein transport  Golgi transport complex  trans-Golgi network membrane  Golgi vesicle prefusion complex stabilization  
Ontology : EGO-EBIGolgi membrane  retrograde transport, vesicle recycling within Golgi  protein binding  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  protein transport  Golgi transport complex  trans-Golgi network membrane  Golgi vesicle prefusion complex stabilization  
NDEx NetworkCOG4
Atlas of Cancer Signalling NetworkCOG4
Wikipedia pathwaysCOG4
Orthology - Evolution
OrthoDB25839
GeneTree (enSembl)ENSG00000103051
Phylogenetic Trees/Animal Genes : TreeFamCOG4
HOVERGENQ9H9E3
HOGENOMQ9H9E3
Homologs : HomoloGeneCOG4
Homology/Alignments : Family Browser (UCSC)COG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG4
dbVarCOG4
ClinVarCOG4
1000_GenomesCOG4 
Exome Variant ServerCOG4
ExAC (Exome Aggregation Consortium)COG4 (select the gene name)
Genetic variants : HAPMAP25839
Genomic Variants (DGV)COG4 [DGVbeta]
DECIPHERCOG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOG4 
Mutations
ICGC Data PortalCOG4 
TCGA Data PortalCOG4 
Broad Tumor PortalCOG4
OASIS PortalCOG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch COG4
DgiDB (Drug Gene Interaction Database)COG4
DoCM (Curated mutations)COG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG4 (select a term)
intoGenCOG4
Cancer3DCOG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606976    613489   
Orphanet20064   
MedgenCOG4
Genetic Testing Registry COG4
NextProtQ9H9E3 [Medical]
TSGene25839
GENETestsCOG4
Target ValidationCOG4
Huge Navigator COG4 [HugePedia]
snp3D : Map Gene to Disease25839
BioCentury BCIQCOG4
ClinGenCOG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25839
Chemical/Pharm GKB GenePA38603
Clinical trialCOG4
Miscellaneous
canSAR (ICR)COG4 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG4
EVEXCOG4
GoPubMedCOG4
iHOPCOG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:11 CEST 2017

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