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COG6 (component of oligomeric golgi complex 6)

Identity

Alias_symbol (synonym)COD2
KIAA1134
Other aliasCDG2L
SHNS
HGNC (Hugo) COG6
LocusID (NCBI) 57511
Atlas_Id 61979
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 39655627 and ends at 39791665 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COG6 (13q14.11) / LHFP (13q13.3)COG6 (13q14.11) / MAPK8 (10q11.22)TNC (9q33.1) / COG6 (13q14.11)
COG6 LHFPCOG6 MAPK8

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG6   18621
Cards
Entrez_Gene (NCBI)COG6  57511  component of oligomeric golgi complex 6
AliasesCDG2L; COD2; SHNS
GeneCards (Weizmann)COG6
Ensembl hg19 (Hinxton)ENSG00000133103 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133103 [Gene_View]  chr13:39655627-39791665 [Contig_View]  COG6 [Vega]
ICGC DataPortalENSG00000133103
TCGA cBioPortalCOG6
AceView (NCBI)COG6
Genatlas (Paris)COG6
WikiGenes57511
SOURCE (Princeton)COG6
Genetics Home Reference (NIH)COG6
Genomic and cartography
GoldenPath hg38 (UCSC)COG6  -     chr13:39655627-39791665 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COG6  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblCOG6 - 13q14.11 [CytoView hg19]  COG6 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBICOG6 [Mapview hg19]  COG6 [Mapview hg38]
OMIM606977   614576   615328   
Gene and transcription
Genbank (Entrez)AB032960 AF116827 AK026638 AK294443 AK310953
RefSeq transcript (Entrez)NM_001145079 NM_020751
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COG6
Cluster EST : UnigeneHs.507805 [ NCBI ]
CGAP (NCI)Hs.507805
Alternative Splicing GalleryENSG00000133103
Gene ExpressionCOG6 [ NCBI-GEO ]   COG6 [ EBI - ARRAY_EXPRESS ]   COG6 [ SEEK ]   COG6 [ MEM ]
Gene Expression Viewer (FireBrowse)COG6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57511
GTEX Portal (Tissue expression)COG6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2V7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2V7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2V7
Splice isoforms : SwissVarQ9Y2V7
PhosPhoSitePlusQ9Y2V7
Domains : Interpro (EBI)COG6   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)COG6 (SM01087)  
Conserved Domain (NCBI)COG6
DMDM Disease mutations57511
Blocks (Seattle)COG6
SuperfamilyQ9Y2V7
Human Protein AtlasENSG00000133103
Peptide AtlasQ9Y2V7
HPRD08445
IPIIPI00940437   IPI00398963   IPI00973581   IPI00642611   IPI01014154   IPI01012866   IPI01015070   IPI01013814   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2V7
IntAct (EBI)Q9Y2V7
FunCoupENSG00000133103
BioGRIDCOG6
STRING (EMBL)COG6
ZODIACCOG6
Ontologies - Pathways
QuickGOQ9Y2V7
Ontology : AmiGOGolgi membrane  protein binding  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  Golgi transport complex  trans-Golgi network membrane  glycosylation  
Ontology : EGO-EBIGolgi membrane  protein binding  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  Golgi transport complex  trans-Golgi network membrane  glycosylation  
NDEx NetworkCOG6
Atlas of Cancer Signalling NetworkCOG6
Wikipedia pathwaysCOG6
Orthology - Evolution
OrthoDB57511
GeneTree (enSembl)ENSG00000133103
Phylogenetic Trees/Animal Genes : TreeFamCOG6
HOVERGENQ9Y2V7
HOGENOMQ9Y2V7
Homologs : HomoloGeneCOG6
Homology/Alignments : Family Browser (UCSC)COG6
Gene fusions - Rearrangements
Fusion: TCGACOG6 LHFP
Fusion: TCGACOG6 MAPK8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG6
dbVarCOG6
ClinVarCOG6
1000_GenomesCOG6 
Exome Variant ServerCOG6
ExAC (Exome Aggregation Consortium)COG6 (select the gene name)
Genetic variants : HAPMAP57511
Genomic Variants (DGV)COG6 [DGVbeta]
DECIPHERCOG6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOG6 
Mutations
ICGC Data PortalCOG6 
TCGA Data PortalCOG6 
Broad Tumor PortalCOG6
OASIS PortalCOG6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch COG6
DgiDB (Drug Gene Interaction Database)COG6
DoCM (Curated mutations)COG6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG6 (select a term)
intoGenCOG6
Cancer3DCOG6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606977    614576    615328   
Orphanet22317   
MedgenCOG6
Genetic Testing Registry COG6
NextProtQ9Y2V7 [Medical]
TSGene57511
GENETestsCOG6
Target ValidationCOG6
Huge Navigator COG6 [HugePedia]
snp3D : Map Gene to Disease57511
BioCentury BCIQCOG6
ClinGenCOG6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57511
Chemical/Pharm GKB GenePA38604
Clinical trialCOG6
Miscellaneous
canSAR (ICR)COG6 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG6
EVEXCOG6
GoPubMedCOG6
iHOPCOG6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:08 CEST 2017

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