Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COG7 (component of oligomeric golgi complex 7)

Identity

Other aliasCDG2E
HGNC (Hugo) COG7
LocusID (NCBI) 91949
Atlas_Id 61980
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 23388493 and ends at 23453191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCZ1 (7p22.1) / COG7 (16p12.2)COG7 (16p12.2) / ACO2 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG7   18622
Cards
Entrez_Gene (NCBI)COG7  91949  component of oligomeric golgi complex 7
AliasesCDG2E
GeneCards (Weizmann)COG7
Ensembl hg19 (Hinxton)ENSG00000168434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168434 [Gene_View]  chr16:23388493-23453191 [Contig_View]  COG7 [Vega]
ICGC DataPortalENSG00000168434
TCGA cBioPortalCOG7
AceView (NCBI)COG7
Genatlas (Paris)COG7
WikiGenes91949
SOURCE (Princeton)COG7
Genetics Home Reference (NIH)COG7
Genomic and cartography
GoldenPath hg38 (UCSC)COG7  -     chr16:23388493-23453191 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COG7  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblCOG7 - 16p12.2 [CytoView hg19]  COG7 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBICOG7 [Mapview hg19]  COG7 [Mapview hg38]
OMIM606978   608779   
Gene and transcription
Genbank (Entrez)AF070568 AK093989 AK130714 AY358632 BC000549
RefSeq transcript (Entrez)NM_153603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COG7
Cluster EST : UnigeneHs.185807 [ NCBI ]
CGAP (NCI)Hs.185807
Alternative Splicing GalleryENSG00000168434
Gene ExpressionCOG7 [ NCBI-GEO ]   COG7 [ EBI - ARRAY_EXPRESS ]   COG7 [ SEEK ]   COG7 [ MEM ]
Gene Expression Viewer (FireBrowse)COG7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91949
GTEX Portal (Tissue expression)COG7
Human Protein AtlasENSG00000168434-COG7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83436   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83436  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83436
Splice isoforms : SwissVarP83436
PhosPhoSitePlusP83436
Domains : Interpro (EBI)COG7   
Domain families : Pfam (Sanger)COG7 (PF10191)   
Domain families : Pfam (NCBI)pfam10191   
Conserved Domain (NCBI)COG7
DMDM Disease mutations91949
Blocks (Seattle)COG7
SuperfamilyP83436
Human Protein Atlas [tissue]ENSG00000168434-COG7 [tissue]
Peptide AtlasP83436
HPRD07373
IPIIPI00164005   IPI00442474   
Protein Interaction databases
DIP (DOE-UCLA)P83436
IntAct (EBI)P83436
FunCoupENSG00000168434
BioGRIDCOG7
STRING (EMBL)COG7
ZODIACCOG7
Ontologies - Pathways
QuickGOP83436
Ontology : AmiGOGolgi membrane  protein binding  nucleolus  Golgi apparatus  protein glycosylation  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi transport complex  trans-Golgi network membrane  protein localization to organelle  protein localization to Golgi apparatus  protein stabilization  
Ontology : EGO-EBIGolgi membrane  protein binding  nucleolus  Golgi apparatus  protein glycosylation  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi transport complex  trans-Golgi network membrane  protein localization to organelle  protein localization to Golgi apparatus  protein stabilization  
NDEx NetworkCOG7
Atlas of Cancer Signalling NetworkCOG7
Wikipedia pathwaysCOG7
Orthology - Evolution
OrthoDB91949
GeneTree (enSembl)ENSG00000168434
Phylogenetic Trees/Animal Genes : TreeFamCOG7
HOVERGENP83436
HOGENOMP83436
Homologs : HomoloGeneCOG7
Homology/Alignments : Family Browser (UCSC)COG7
Gene fusions - Rearrangements
Fusion: Tumor Portal COG7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG7
dbVarCOG7
ClinVarCOG7
1000_GenomesCOG7 
Exome Variant ServerCOG7
ExAC (Exome Aggregation Consortium)ENSG00000168434
GNOMAD BrowserENSG00000168434
Genetic variants : HAPMAP91949
Genomic Variants (DGV)COG7 [DGVbeta]
DECIPHERCOG7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOG7 
Mutations
ICGC Data PortalCOG7 
TCGA Data PortalCOG7 
Broad Tumor PortalCOG7
OASIS PortalCOG7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COG7
DgiDB (Drug Gene Interaction Database)COG7
DoCM (Curated mutations)COG7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG7 (select a term)
intoGenCOG7
Cancer3DCOG7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606978    608779   
Orphanet11359   
MedgenCOG7
Genetic Testing Registry COG7
NextProtP83436 [Medical]
TSGene91949
GENETestsCOG7
Target ValidationCOG7
Huge Navigator COG7 [HugePedia]
snp3D : Map Gene to Disease91949
BioCentury BCIQCOG7
ClinGenCOG7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91949
Chemical/Pharm GKB GenePA38605
Clinical trialCOG7
Miscellaneous
canSAR (ICR)COG7 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG7
EVEXCOG7
GoPubMedCOG7
iHOPCOG7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:03 CET 2017

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