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COG8 (component of oligomeric golgi complex 8)

Identity

Alias_symbol (synonym)FLJ22315
DOR1
Other aliasCDG2H
HGNC (Hugo) COG8
LocusID (NCBI) 84342
Atlas_Id 54227
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69362524 and ends at 69373526 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COG8 (16q22.1) / TERF2 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COG8   18623
Cards
Entrez_Gene (NCBI)COG8  84342  component of oligomeric golgi complex 8
AliasesCDG2H; DOR1
GeneCards (Weizmann)COG8
Ensembl hg19 (Hinxton)ENSG00000213380 [Gene_View]  chr16:69362524-69373526 [Contig_View]  COG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213380 [Gene_View]  chr16:69362524-69373526 [Contig_View]  COG8 [Vega]
ICGC DataPortalENSG00000213380
TCGA cBioPortalCOG8
AceView (NCBI)COG8
Genatlas (Paris)COG8
WikiGenes84342
SOURCE (Princeton)COG8
Genetics Home Reference (NIH)COG8
Genomic and cartography
GoldenPath hg19 (UCSC)COG8  -     chr16:69362524-69373526 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COG8  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblCOG8 - 16q22.1 [CytoView hg19]  COG8 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICOG8 [Mapview hg19]  COG8 [Mapview hg38]
OMIM606979   611182   
Gene and transcription
Genbank (Entrez)AK025968 AK056344 AK225391 AK302605 BC017492
RefSeq transcript (Entrez)NM_032382
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_009013 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)COG8
Cluster EST : UnigeneHs.130849 [ NCBI ]
CGAP (NCI)Hs.130849
Alternative Splicing GalleryENSG00000213380
Gene ExpressionCOG8 [ NCBI-GEO ]   COG8 [ EBI - ARRAY_EXPRESS ]   COG8 [ SEEK ]   COG8 [ MEM ]
Gene Expression Viewer (FireBrowse)COG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84342
GTEX Portal (Tissue expression)COG8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MW5
Splice isoforms : SwissVarQ96MW5
PhosPhoSitePlusQ96MW5
Domains : Interpro (EBI)COG8    COG8_Metazoal_Plant    Cullin_repeat-like_dom   
Domain families : Pfam (Sanger)Dor1 (PF04124)   
Domain families : Pfam (NCBI)pfam04124   
Conserved Domain (NCBI)COG8
DMDM Disease mutations84342
Blocks (Seattle)COG8
SuperfamilyQ96MW5
Human Protein AtlasENSG00000213380
Peptide AtlasQ96MW5
HPRD07374
IPIIPI00140201   
Protein Interaction databases
DIP (DOE-UCLA)Q96MW5
IntAct (EBI)Q96MW5
FunCoupENSG00000213380
BioGRIDCOG8
STRING (EMBL)COG8
ZODIACCOG8
Ontologies - Pathways
QuickGOQ96MW5
Ontology : AmiGOGolgi membrane  protein binding  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  membrane  Golgi transport complex  Golgi transport complex  trans-Golgi network membrane  
Ontology : EGO-EBIGolgi membrane  protein binding  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  protein transport  membrane  Golgi transport complex  Golgi transport complex  trans-Golgi network membrane  
NDEx NetworkCOG8
Atlas of Cancer Signalling NetworkCOG8
Wikipedia pathwaysCOG8
Orthology - Evolution
OrthoDB84342
GeneTree (enSembl)ENSG00000213380
Phylogenetic Trees/Animal Genes : TreeFamCOG8
HOVERGENQ96MW5
HOGENOMQ96MW5
Homologs : HomoloGeneCOG8
Homology/Alignments : Family Browser (UCSC)COG8
Gene fusions - Rearrangements
Fusion : MitelmanCOG8/TERF2 [16q22.1/16q22.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COG8
dbVarCOG8
ClinVarCOG8
1000_GenomesCOG8 
Exome Variant ServerCOG8
ExAC (Exome Aggregation Consortium)COG8 (select the gene name)
Genetic variants : HAPMAP84342
Genomic Variants (DGV)COG8 [DGVbeta]
DECIPHER (Syndromes)16:69362524-69373526  ENSG00000213380
CONAN: Copy Number AnalysisCOG8 
Mutations
ICGC Data PortalCOG8 
TCGA Data PortalCOG8 
Broad Tumor PortalCOG8
OASIS PortalCOG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOG8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOG8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch COG8
DgiDB (Drug Gene Interaction Database)COG8
DoCM (Curated mutations)COG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COG8 (select a term)
intoGenCOG8
Cancer3DCOG8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606979    611182   
Orphanet12587   
MedgenCOG8
Genetic Testing Registry COG8
NextProtQ96MW5 [Medical]
TSGene84342
GENETestsCOG8
Huge Navigator COG8 [HugePedia]
snp3D : Map Gene to Disease84342
BioCentury BCIQCOG8
ClinGenCOG8 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84342
Chemical/Pharm GKB GenePA38606
Clinical trialCOG8
Miscellaneous
canSAR (ICR)COG8 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOG8
EVEXCOG8
GoPubMedCOG8
iHOPCOG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:09 CEST 2017

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