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COIL (coilin)

Identity

Alias_symbol (synonym)CLN80
p80-coilin
Other alias
HGNC (Hugo) COIL
LocusID (NCBI) 8161
Atlas_Id 46332
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 56938200 and ends at 56961050 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COIL (17q22) / CA4 (17q23.1)COIL (17q22) / CDR2L (17q25.1)INPPL1 (11q13.4) / COIL (17q22)
COIL 17q22 / CA4 17q23.1COIL 17q22 / CDR2L 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COIL   2184
Cards
Entrez_Gene (NCBI)COIL  8161  coilin
AliasesCLN80; p80-coilin
GeneCards (Weizmann)COIL
Ensembl hg19 (Hinxton)ENSG00000121058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121058 [Gene_View]  chr17:56938200-56961050 [Contig_View]  COIL [Vega]
ICGC DataPortalENSG00000121058
TCGA cBioPortalCOIL
AceView (NCBI)COIL
Genatlas (Paris)COIL
WikiGenes8161
SOURCE (Princeton)COIL
Genetics Home Reference (NIH)COIL
Genomic and cartography
GoldenPath hg38 (UCSC)COIL  -     chr17:56938200-56961050 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COIL  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblCOIL - 17q22 [CytoView hg19]  COIL - 17q22 [CytoView hg38]
Mapping of homologs : NCBICOIL [Mapview hg19]  COIL [Mapview hg38]
OMIM600272   
Gene and transcription
Genbank (Entrez)AK313616 AW021880 BC010385 DQ892927 DQ896176
RefSeq transcript (Entrez)NM_004645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COIL
Cluster EST : UnigeneHs.532795 [ NCBI ]
CGAP (NCI)Hs.532795
Alternative Splicing GalleryENSG00000121058
Gene ExpressionCOIL [ NCBI-GEO ]   COIL [ EBI - ARRAY_EXPRESS ]   COIL [ SEEK ]   COIL [ MEM ]
Gene Expression Viewer (FireBrowse)COIL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8161
GTEX Portal (Tissue expression)COIL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP38432   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP38432  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP38432
Splice isoforms : SwissVarP38432
PhosPhoSitePlusP38432
Domains : Interpro (EBI)Coilin    Coilin_N   
Domain families : Pfam (Sanger)Coilin_N (PF15862)   
Domain families : Pfam (NCBI)pfam15862   
Conserved Domain (NCBI)COIL
DMDM Disease mutations8161
Blocks (Seattle)COIL
SuperfamilyP38432
Human Protein AtlasENSG00000121058
Peptide AtlasP38432
HPRD02605
IPIIPI00006442   
Protein Interaction databases
DIP (DOE-UCLA)P38432
IntAct (EBI)P38432
FunCoupENSG00000121058
BioGRIDCOIL
STRING (EMBL)COIL
ZODIACCOIL
Ontologies - Pathways
QuickGOP38432
Ontology : AmiGOfibrillar center  protein binding  nucleus  nucleoplasm  nucleolus  protein C-terminus binding  Cajal body  membrane  nuclear body  identical protein binding  
Ontology : EGO-EBIfibrillar center  protein binding  nucleus  nucleoplasm  nucleolus  protein C-terminus binding  Cajal body  membrane  nuclear body  identical protein binding  
NDEx NetworkCOIL
Atlas of Cancer Signalling NetworkCOIL
Wikipedia pathwaysCOIL
Orthology - Evolution
OrthoDB8161
GeneTree (enSembl)ENSG00000121058
Phylogenetic Trees/Animal Genes : TreeFamCOIL
HOVERGENP38432
HOGENOMP38432
Homologs : HomoloGeneCOIL
Homology/Alignments : Family Browser (UCSC)COIL
Gene fusions - Rearrangements
Fusion : MitelmanCOIL/CA4 [17q22/17q23.1]  
Fusion : MitelmanCOIL/CDR2L [17q22/17q25.1]  [t(17;17)(q22;q25)]  
Fusion: TCGACOIL 17q22 CA4 17q23.1 BLCA
Fusion: TCGACOIL 17q22 CDR2L 17q25.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOIL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COIL
dbVarCOIL
ClinVarCOIL
1000_GenomesCOIL 
Exome Variant ServerCOIL
ExAC (Exome Aggregation Consortium)COIL (select the gene name)
Genetic variants : HAPMAP8161
Genomic Variants (DGV)COIL [DGVbeta]
DECIPHERCOIL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOIL 
Mutations
ICGC Data PortalCOIL 
TCGA Data PortalCOIL 
Broad Tumor PortalCOIL
OASIS PortalCOIL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOIL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOIL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COIL
DgiDB (Drug Gene Interaction Database)COIL
DoCM (Curated mutations)COIL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COIL (select a term)
intoGenCOIL
Cancer3DCOIL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600272   
Orphanet
MedgenCOIL
Genetic Testing Registry COIL
NextProtP38432 [Medical]
TSGene8161
GENETestsCOIL
Huge Navigator COIL [HugePedia]
snp3D : Map Gene to Disease8161
BioCentury BCIQCOIL
ClinGenCOIL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8161
Chemical/Pharm GKB GenePA26700
Clinical trialCOIL
Miscellaneous
canSAR (ICR)COIL (select the gene name)
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOIL
EVEXCOIL
GoPubMedCOIL
iHOPCOIL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:16 CEST 2017

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