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COL13A1 (collagen type XIII alpha 1 chain)


Alias (NCBI)CMS19
HGNC (Hugo) COL13A1
HGNC Previous namecollagen, type XIII, alpha 1
LocusID (NCBI) 1305
Atlas_Id 57587
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 69801906 and ends at 69959144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)COL13A1   2190
Entrez_Gene (NCBI)COL13A1    collagen type XIII alpha 1 chain
GeneCards (Weizmann)COL13A1
Ensembl hg19 (Hinxton)ENSG00000197467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197467 [Gene_View]  ENSG00000197467 [Sequence]  chr10:69801906-69959144 [Contig_View]  COL13A1 [Vega]
ICGC DataPortalENSG00000197467
TCGA cBioPortalCOL13A1
AceView (NCBI)COL13A1
Genatlas (Paris)COL13A1
SOURCE (Princeton)COL13A1
Genetics Home Reference (NIH)COL13A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL13A1  -     chr10:69801906-69959144 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL13A1  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCOL13A1 - 10q22.1 [CytoView hg19]  COL13A1 - 10q22.1 [CytoView hg38]
Genome Data Viewer NCBICOL13A1 [Mapview hg19]  
OMIM120350   616720   
Gene and transcription
Genbank (Entrez)AI741175 AJ293624 AK124476 BC136385 BC139913
RefSeq transcript (Entrez)NM_001130103 NM_001320951 NM_001368882 NM_001368883 NM_001368884 NM_001368885 NM_001368886 NM_001368895 NM_001368896 NM_001368897 NM_001368898 NM_005203 NM_080798 NM_080799 NM_080800 NM_080801 NM_080802 NM_080803 NM_080804 NM_080805 NM_080806 NM_080807 NM_080808 NM_080809 NM_080810 NM_080811 NM_080812 NM_080813 NM_080814 NM_080815
Consensus coding sequences : CCDS (NCBI)COL13A1
Gene ExpressionCOL13A1 [ NCBI-GEO ]   COL13A1 [ EBI - ARRAY_EXPRESS ]   COL13A1 [ SEEK ]   COL13A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL13A1 [ Firebrowse - Broad ]
GenevisibleExpression of COL13A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1305
GTEX Portal (Tissue expression)COL13A1
Human Protein AtlasENSG00000197467-COL13A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL13A1
Human Protein Atlas [tissue]ENSG00000197467-COL13A1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:41 CEST 2021

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