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COL13A1 (collagen type XIII alpha 1 chain)

Identity

Alias (NCBI)CMS19
COLXIIIA1
HGNC (Hugo) COL13A1
HGNC Previous namecollagen, type XIII, alpha 1
LocusID (NCBI) 1305
Atlas_Id 57587
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 69801906 and ends at 69959144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)COL13A1   2190
Cards
Entrez_Gene (NCBI)COL13A1    collagen type XIII alpha 1 chain
AliasesCMS19; COLXIIIA1
GeneCards (Weizmann)COL13A1
Ensembl hg19 (Hinxton)ENSG00000197467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197467 [Gene_View]  ENSG00000197467 [Sequence]  chr10:69801906-69959144 [Contig_View]  COL13A1 [Vega]
ICGC DataPortalENSG00000197467
TCGA cBioPortalCOL13A1
AceView (NCBI)COL13A1
Genatlas (Paris)COL13A1
SOURCE (Princeton)COL13A1
Genetics Home Reference (NIH)COL13A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL13A1  -     chr10:69801906-69959144 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL13A1  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCOL13A1 - 10q22.1 [CytoView hg19]  COL13A1 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000197467
Genome Data Viewer NCBICOL13A1 [Mapview hg19]  
OMIM120350   616720   
Gene and transcription
Genbank (Entrez)AI741175 AJ293624 AK124476 BC136385 BC139913
RefSeq transcript (Entrez)NM_001130103 NM_001320951 NM_001368882 NM_001368883 NM_001368884 NM_001368885 NM_001368886 NM_001368895 NM_001368896 NM_001368897 NM_001368898 NM_005203 NM_080798 NM_080799 NM_080800 NM_080801 NM_080802 NM_080803 NM_080804 NM_080805 NM_080806 NM_080807 NM_080808 NM_080809 NM_080810 NM_080811 NM_080812 NM_080813 NM_080814 NM_080815
Consensus coding sequences : CCDS (NCBI)COL13A1
Gene ExpressionCOL13A1 [ NCBI-GEO ]   COL13A1 [ EBI - ARRAY_EXPRESS ]   COL13A1 [ SEEK ]   COL13A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL13A1 [ Firebrowse - Broad ]
GenevisibleExpression of COL13A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1305
GTEX Portal (Tissue expression)COL13A1
Human Protein AtlasENSG00000197467-COL13A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL13A1
Human Protein Atlas [tissue]ENSG00000197467-COL13A1 [tissue]
Protein Interaction databases
BioGRIDCOL13A1
STRING (EMBL)COL13A1
ZODIACCOL13A1
Ontologies - Pathways
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOL13A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:04:41 CEST 2021

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