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COL14A1 (collagen type XIV alpha 1 chain)

Identity

Alias_namesUND
undulin
collagen, type XIV, alpha 1
Other alias
HGNC (Hugo) COL14A1
LocusID (NCBI) 7373
Atlas_Id 40122
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 120125108 and ends at 120373575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AC010859.1 () / COL14A1 (8q24.12)COL14A1 (8q24.12) / DEPTOR (8q24.12)COL14A1 (8q24.12) / UBXN2B (8q12.1)
CTC1 (17p13.1) / COL14A1 (8q24.12)DNAJA2 (16q11.2) / COL14A1 (8q24.12)FGFR2 (10q26.13) / COL14A1 (8q24.12)
AC010859.1 COL14A1 8q24.12COL14A1 8q24.12 / DEPTOR 8q24.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL14A1   2191
Cards
Entrez_Gene (NCBI)COL14A1  7373  collagen type XIV alpha 1 chain
AliasesUND
GeneCards (Weizmann)COL14A1
Ensembl hg19 (Hinxton)ENSG00000187955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187955 [Gene_View]  chr8:120125108-120373575 [Contig_View]  COL14A1 [Vega]
ICGC DataPortalENSG00000187955
TCGA cBioPortalCOL14A1
AceView (NCBI)COL14A1
Genatlas (Paris)COL14A1
WikiGenes7373
SOURCE (Princeton)COL14A1
Genetics Home Reference (NIH)COL14A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL14A1  -     chr8:120125108-120373575 +  8q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL14A1  -     8q24.12   [Description]    (hg19-Feb_2009)
EnsemblCOL14A1 - 8q24.12 [CytoView hg19]  COL14A1 - 8q24.12 [CytoView hg38]
Mapping of homologs : NCBICOL14A1 [Mapview hg19]  COL14A1 [Mapview hg38]
OMIM120324   
Gene and transcription
Genbank (Entrez)AK021997 AK293080 AK307716 AK311498 BC014640
RefSeq transcript (Entrez)NM_021110
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL14A1
Cluster EST : UnigeneHs.657621 [ NCBI ]
CGAP (NCI)Hs.657621
Alternative Splicing GalleryENSG00000187955
Gene ExpressionCOL14A1 [ NCBI-GEO ]   COL14A1 [ EBI - ARRAY_EXPRESS ]   COL14A1 [ SEEK ]   COL14A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL14A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7373
GTEX Portal (Tissue expression)COL14A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05707   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05707  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05707
Splice isoforms : SwissVarQ05707
PhosPhoSitePlusQ05707
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    VWFA (PS50234)   
Domains : Interpro (EBI)Collagen    ConA-like_dom    FN3_dom    Ig-like_fold    Laminin_G    VWF_A   
Domain families : Pfam (Sanger)Collagen (PF01391)    fn3 (PF00041)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam01391    pfam00041    pfam00092   
Domain families : Smart (EMBL)FN3 (SM00060)  TSPN (SM00210)  VWA (SM00327)  
Conserved Domain (NCBI)COL14A1
DMDM Disease mutations7373
Blocks (Seattle)COL14A1
SuperfamilyQ05707
Human Protein AtlasENSG00000187955
Peptide AtlasQ05707
HPRD00379
IPIIPI00176193   IPI00550918   IPI00402215   IPI00853156   IPI01014678   IPI00977170   
Protein Interaction databases
DIP (DOE-UCLA)Q05707
IntAct (EBI)Q05707
FunCoupENSG00000187955
BioGRIDCOL14A1
STRING (EMBL)COL14A1
ZODIACCOL14A1
Ontologies - Pathways
QuickGOQ05707
Ontology : AmiGORNA binding  extracellular matrix structural constituent  collagen binding  extracellular region  proteinaceous extracellular matrix  collagen trimer  collagen type XIV trimer  extracellular space  endoplasmic reticulum lumen  single organismal cell-cell adhesion  extracellular matrix organization  collagen fibril organization  protein binding, bridging  extracellular matrix  extracellular matrix  extracellular exosome  
Ontology : EGO-EBIRNA binding  extracellular matrix structural constituent  collagen binding  extracellular region  proteinaceous extracellular matrix  collagen trimer  collagen type XIV trimer  extracellular space  endoplasmic reticulum lumen  single organismal cell-cell adhesion  extracellular matrix organization  collagen fibril organization  protein binding, bridging  extracellular matrix  extracellular matrix  extracellular exosome  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkCOL14A1
Atlas of Cancer Signalling NetworkCOL14A1
Wikipedia pathwaysCOL14A1
Orthology - Evolution
OrthoDB7373
GeneTree (enSembl)ENSG00000187955
Phylogenetic Trees/Animal Genes : TreeFamCOL14A1
HOVERGENQ05707
HOGENOMQ05707
Homologs : HomoloGeneCOL14A1
Homology/Alignments : Family Browser (UCSC)COL14A1
Gene fusions - Rearrangements
Fusion : MitelmanCOL14A1/DEPTOR [8q24.12/8q24.12]  
Fusion : MitelmanDNAJA2/COL14A1 [16q11.2/8q24.12]  [t(8;16)(q24;q12)]  
Fusion: TCGAAC010859.1 COL14A1 8q24.12 LUSC
Fusion: TCGACOL14A1 8q24.12 DEPTOR 8q24.12 LUAD OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOL14A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL14A1
dbVarCOL14A1
ClinVarCOL14A1
1000_GenomesCOL14A1 
Exome Variant ServerCOL14A1
ExAC (Exome Aggregation Consortium)COL14A1 (select the gene name)
Genetic variants : HAPMAP7373
Genomic Variants (DGV)COL14A1 [DGVbeta]
DECIPHERCOL14A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOL14A1 
Mutations
ICGC Data PortalCOL14A1 
TCGA Data PortalCOL14A1 
Broad Tumor PortalCOL14A1
OASIS PortalCOL14A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOL14A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOL14A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COL14A1
DgiDB (Drug Gene Interaction Database)COL14A1
DoCM (Curated mutations)COL14A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COL14A1 (select a term)
intoGenCOL14A1
Cancer3DCOL14A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM120324   
Orphanet11527   
MedgenCOL14A1
Genetic Testing Registry COL14A1
NextProtQ05707 [Medical]
TSGene7373
GENETestsCOL14A1
Target ValidationCOL14A1
Huge Navigator COL14A1 [HugePedia]
snp3D : Map Gene to Disease7373
BioCentury BCIQCOL14A1
ClinGenCOL14A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7373
Chemical/Pharm GKB GenePA26707
Clinical trialCOL14A1
Miscellaneous
canSAR (ICR)COL14A1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL14A1
EVEXCOL14A1
GoPubMedCOL14A1
iHOPCOL14A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:06 CEST 2017

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