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COL15A1 (collagen type XV alpha 1)

Identity

Alias_namescollagen
Other alias-
HGNC (Hugo) COL15A1
LocusID (NCBI) 1306
Atlas_Id 55683
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 101705995 and ends at 101833074 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAMBI (10p12.1) / COL15A1 (9q22.33)CTDSP2 (12q14.1) / COL15A1 (9q22.33)KIDINS220 (2p25.1) / COL15A1 (9q22.33)
LY6E (8q24.3) / COL15A1 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL15A1   2192
Cards
Entrez_Gene (NCBI)COL15A1  1306  collagen type XV alpha 1
Aliases
GeneCards (Weizmann)COL15A1
Ensembl hg19 (Hinxton)ENSG00000204291 [Gene_View]  chr9:101705995-101833074 [Contig_View]  COL15A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204291 [Gene_View]  chr9:101705995-101833074 [Contig_View]  COL15A1 [Vega]
ICGC DataPortalENSG00000204291
TCGA cBioPortalCOL15A1
AceView (NCBI)COL15A1
Genatlas (Paris)COL15A1
WikiGenes1306
SOURCE (Princeton)COL15A1
Genetics Home Reference (NIH)COL15A1
Genomic and cartography
GoldenPath hg19 (UCSC)COL15A1  -     chr9:101705995-101833074 +  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COL15A1  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblCOL15A1 - 9q22.33 [CytoView hg19]  COL15A1 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBICOL15A1 [Mapview hg19]  COL15A1 [Mapview hg38]
OMIM120325   
Gene and transcription
Genbank (Entrez)AK095885 AK308438 BC157094 BX337171 D21230
RefSeq transcript (Entrez)NM_001855
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)COL15A1
Cluster EST : UnigeneHs.409034 [ NCBI ]
CGAP (NCI)Hs.409034
Alternative Splicing GalleryENSG00000204291
Gene ExpressionCOL15A1 [ NCBI-GEO ]   COL15A1 [ EBI - ARRAY_EXPRESS ]   COL15A1 [ SEEK ]   COL15A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL15A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1306
GTEX Portal (Tissue expression)COL15A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP39059   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP39059  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP39059
Splice isoforms : SwissVarP39059
PhosPhoSitePlusP39059
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin_fold    Collagen    Collagenase_NC10/endostatin    ConA-like_dom    Laminin_G   
Domain families : Pfam (Sanger)Collagen (PF01391)    Endostatin (PF06482)   
Domain families : Pfam (NCBI)pfam01391    pfam06482   
Domain families : Smart (EMBL)LamG (SM00282)  TSPN (SM00210)  
Conserved Domain (NCBI)COL15A1
DMDM Disease mutations1306
Blocks (Seattle)COL15A1
PDB (SRS)3N3F   
PDB (PDBSum)3N3F   
PDB (IMB)3N3F   
PDB (RSDB)3N3F   
Structural Biology KnowledgeBase3N3F   
SCOP (Structural Classification of Proteins)3N3F   
CATH (Classification of proteins structures)3N3F   
SuperfamilyP39059
Human Protein AtlasENSG00000204291
Peptide AtlasP39059
HPRD00380
IPIIPI00295414   IPI01009324   
Protein Interaction databases
DIP (DOE-UCLA)P39059
IntAct (EBI)P39059
FunCoupENSG00000204291
BioGRIDCOL15A1
STRING (EMBL)COL15A1
ZODIACCOL15A1
Ontologies - Pathways
QuickGOP39059
Ontology : AmiGOangiogenesis  extracellular matrix structural constituent  extracellular region  collagen type XV trimer  extracellular space  endoplasmic reticulum lumen  cell adhesion  signal transduction  integral component of membrane  cell differentiation  collagen catabolic process  extracellular matrix  extracellular matrix  extracellular exosome  
Ontology : EGO-EBIangiogenesis  extracellular matrix structural constituent  extracellular region  collagen type XV trimer  extracellular space  endoplasmic reticulum lumen  cell adhesion  signal transduction  integral component of membrane  cell differentiation  collagen catabolic process  extracellular matrix  extracellular matrix  extracellular exosome  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkCOL15A1
Atlas of Cancer Signalling NetworkCOL15A1
Wikipedia pathwaysCOL15A1
Orthology - Evolution
OrthoDB1306
GeneTree (enSembl)ENSG00000204291
Phylogenetic Trees/Animal Genes : TreeFamCOL15A1
HOVERGENP39059
HOGENOMP39059
Homologs : HomoloGeneCOL15A1
Homology/Alignments : Family Browser (UCSC)COL15A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOL15A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL15A1
dbVarCOL15A1
ClinVarCOL15A1
1000_GenomesCOL15A1 
Exome Variant ServerCOL15A1
ExAC (Exome Aggregation Consortium)COL15A1 (select the gene name)
Genetic variants : HAPMAP1306
Genomic Variants (DGV)COL15A1 [DGVbeta]
DECIPHER (Syndromes)9:101705995-101833074  ENSG00000204291
CONAN: Copy Number AnalysisCOL15A1 
Mutations
ICGC Data PortalCOL15A1 
TCGA Data PortalCOL15A1 
Broad Tumor PortalCOL15A1
OASIS PortalCOL15A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOL15A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOL15A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COL15A1
DgiDB (Drug Gene Interaction Database)COL15A1
DoCM (Curated mutations)COL15A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COL15A1 (select a term)
intoGenCOL15A1
Cancer3DCOL15A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM120325   
Orphanet
MedgenCOL15A1
Genetic Testing Registry COL15A1
NextProtP39059 [Medical]
TSGene1306
GENETestsCOL15A1
Huge Navigator COL15A1 [HugePedia]
snp3D : Map Gene to Disease1306
BioCentury BCIQCOL15A1
ClinGenCOL15A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1306
Chemical/Pharm GKB GenePA26708
Clinical trialCOL15A1
Miscellaneous
canSAR (ICR)COL15A1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL15A1
EVEXCOL15A1
GoPubMedCOL15A1
iHOPCOL15A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:10 CEST 2017

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