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COL18A1-AS1 (COL18A1 antisense RNA 1)

Identity

Alias_namesC21orf123
NCRNA00175
chromosome 21 open reading frame 123
non-protein coding RNA 175
COL18A1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)PRED80
Other alias
HGNC (Hugo) COL18A1-AS1
LocusID (NCBI) 378832
Atlas_Id 61983
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45419716 and ends at 45425070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL18A1-AS1   23132
Cards
Entrez_Gene (NCBI)COL18A1-AS1  378832  COL18A1 antisense RNA 1
AliasesC21orf123; NCRNA00175; PRED80
GeneCards (Weizmann)COL18A1-AS1
Ensembl hg19 (Hinxton)ENSG00000183535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183535 [Gene_View]  chr21:45419716-45425070 [Contig_View]  COL18A1-AS1 [Vega]
ICGC DataPortalENSG00000183535
TCGA cBioPortalCOL18A1-AS1
AceView (NCBI)COL18A1-AS1
Genatlas (Paris)COL18A1-AS1
WikiGenes378832
SOURCE (Princeton)COL18A1-AS1
Genetics Home Reference (NIH)COL18A1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)COL18A1-AS1  -     chr21:45419716-45425070 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL18A1-AS1  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblCOL18A1-AS1 - 21q22.3 [CytoView hg19]  COL18A1-AS1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBICOL18A1-AS1 [Mapview hg19]  COL18A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096071 BC111539 BC111540
RefSeq transcript (Entrez)NM_199175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL18A1-AS1
Cluster EST : UnigeneHs.517353 [ NCBI ]
CGAP (NCI)Hs.517353
Alternative Splicing GalleryENSG00000183535
Gene ExpressionCOL18A1-AS1 [ NCBI-GEO ]   COL18A1-AS1 [ EBI - ARRAY_EXPRESS ]   COL18A1-AS1 [ SEEK ]   COL18A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL18A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)378832
GTEX Portal (Tissue expression)COL18A1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL18A1-AS1
DMDM Disease mutations378832
Blocks (Seattle)COL18A1-AS1
Human Protein AtlasENSG00000183535
HPRD10736
IPIIPI00167618   
Protein Interaction databases
FunCoupENSG00000183535
BioGRIDCOL18A1-AS1
STRING (EMBL)COL18A1-AS1
ZODIACCOL18A1-AS1
Ontologies - Pathways
Huge Navigator COL18A1-AS1 [HugePedia]
snp3D : Map Gene to Disease378832
BioCentury BCIQCOL18A1-AS1
ClinGenCOL18A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378832
Chemical/Pharm GKB GenePA165378436
Clinical trialCOL18A1-AS1
Miscellaneous
canSAR (ICR)COL18A1-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL18A1-AS1
EVEXCOL18A1-AS1
GoPubMedCOL18A1-AS1
iHOPCOL18A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:10 CEST 2017

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