COL18A1 (collagen, type XVIII, alpha 1)

Identity

Other names	FLJ27325
	KNO
	KNO1
	MGC74745
HGNC	COL18A1
Location	21q22.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	COL18A1   2195
Entrez_Gene	COL18A1  80781  collagen, type XVIII, alpha 1
	Cards
GeneCards	COL18A1
Ensembl	COL18A1 [Search_View]   ENSG00000182871 [Gene_View]
Genatlas	COL18A1
GeneLynx	COL18A1
eGenome	COL18A1
euGene	80781
	Genomic and cartography
GoldenPath	COL18A1  -  21q22.3   chr21:45699852-45758062 +  21q22.3   [Description]    (hg18-March_2006)
Ensembl	COL18A1 - 21q22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	COL18A1
	Gene and transcription
Genbank	AF018081 [ ENTREZ ]
Genbank	AF018082 [ ENTREZ ]
Genbank	AF184060 [ ENTREZ ]
Genbank	AF333246 [ ENTREZ ]
Genbank	AF333247 [ ENTREZ ]
RefSeq	NM_030582 [ SRS ]    NM_030582 [ ENTREZ ]
RefSeq	NM_130445 [ SRS ]    NM_130445 [ ENTREZ ]
RefSeq	AC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeq	AC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeq	NC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeq	NT_011515 [ SRS ]    NT_011515 [ ENTREZ ]
RefSeq	NW_001838716 [ SRS ]    NW_001838716 [ ENTREZ ]
RefSeq	NW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
AceView	COL18A1 AceView - NCBI
Unigene	Hs.517356 [ SRS ]    Hs.517356 [ NCBI ]     HS517356 [ spliceNest ]
Fast-db	4412 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P39060 [ SRS]    P39060 [ EXPASY ]     P39060 [ INTERPRO ]     P39060 [ UNIPROT ]
Prosite	PS50038 FZ [ SRS ]    PS50038 FZ [ Expasy ]
Interpro	IPR016186 C-type_lectin-like [ SRS ]    IPR016186 C-type_lectin-like [ EBI ]
Interpro	IPR008160 Collagen [ SRS ]    IPR008160 Collagen [ EBI ]
Interpro	IPR010363 DUF959_COL18_N [ SRS ]    IPR010363 DUF959_COL18_N [ EBI ]
Interpro	IPR010515 Endostatin [ SRS ]    IPR010515 Endostatin [ EBI ]
Interpro	IPR000024 Frizzled_Cys-rich [ SRS ]    IPR000024 Frizzled_Cys-rich [ EBI ]
Interpro	IPR001791 Laminin_G [ SRS ]    IPR001791 Laminin_G [ EBI ]
Interpro	IPR003129 Laminin_G_TSP_N [ SRS ]    IPR003129 Laminin_G_TSP_N [ EBI ]
CluSTr	P39060
Pfam	PF01391 Collagen [ SRS ]    PF01391 Collagen [ Sanger ]    pfam01391 [ NCBI-CDD ]
Pfam	PF06121 DUF959 [ SRS ]    PF06121 DUF959 [ Sanger ]    pfam06121 [ NCBI-CDD ]
Pfam	PF06482 Endostatin [ SRS ]    PF06482 Endostatin [ Sanger ]    pfam06482 [ NCBI-CDD ]
Pfam	PF01392 Fz [ SRS ]    PF01392 Fz [ Sanger ]    pfam01392 [ NCBI-CDD ]
Smart	SM00063 FRI [EMBL]
Smart	SM00282 LamG [EMBL]
Smart	SM00210 TSPN [EMBL]
Prodom	PD000007 Clg_helix[INRA-Toulouse]
Prodom	P39060 COIA1_HUMAN [ Domain structure ]   P39060 COIA1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P39060
PDB	1BNL [ SRS ]    1BNL [ PdbSum ],   1BNL [ IMB ]   1BNL [ RSDB ]
HPRD	00382
	Protein Interaction databases
DIP	P39060
IntAct	P39060
	Polymorphism : SNP, mutations, diseases
OMIM	120328;267750    [ map ]
GENECLINICS	120328;267750
SNP	COL18A1 [dbSNP-NCBI]
SNP	NM_030582 [SNP-NCI]
SNP	NM_130445 [SNP-NCI]
SNP	COL18A1 [GeneSNPs - Utah]  COL18A1] [HGBASE - SRS]
HAPMAP	COL18A1 [HAPMAP]
HGMD	COL18A1
	General knowledge
Family Browser	COL18A1 [UCSC Family Browser]
SOURCE	NM_030582
SOURCE	NM_130445
SMD	Hs.517356
SAGE	Hs.517356
GO	structural molecule activity [Amigo]  structural molecule activity
GO	extracellular matrix structural constituent [Amigo]  extracellular matrix structural constituent
GO	binding [Amigo]  binding
GO	protein binding [Amigo]  protein binding
GO	extracellular region [Amigo]  extracellular region
GO	collagen [Amigo]  collagen
GO	cytoplasm [Amigo]  cytoplasm
GO	phosphate transport [Amigo]  phosphate transport
GO	cell adhesion [Amigo]  cell adhesion
GO	visual perception [Amigo]  visual perception
GO	zinc ion binding [Amigo]  zinc ion binding
GO	negative regulation of cell proliferation [Amigo]  negative regulation of cell proliferation
GO	organ morphogenesis [Amigo]  organ morphogenesis
GO	extracellular matrix [Amigo]  extracellular matrix
GO	metal ion binding [Amigo]  metal ion binding
PubGene	COL18A1
TreeFam	COL18A1
CTD	80781 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	COL18A1 Related clones (RZPD - Berlin)
	PubMed
PubMed	80 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:05:39 2008