Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COL18A1 (collagen type XVIII alpha 1 chain)

Identity

Alias (NCBI)GLCC
KNO
KNO1
KS
HGNC (Hugo) COL18A1
HGNC Alias symbKS
KNO1
HGNC Alias nameendostatin
HGNC Previous nameKNO
HGNC Previous nameKnobloch syndrome, type 1
 collagen, type XVIII, alpha 1
LocusID (NCBI) 80781
Atlas_Id 40123
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45405165 and ends at 45513720 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL18A1 (21q22.3) / ADARB1 (21q22.3)COL18A1 (21q22.3) / CALM3 (19q13.32)COL18A1 (21q22.3) / COL18A1 (21q22.3)
COL18A1 (21q22.3) / DDRGK1 (20p13)COL18A1 (21q22.3) / HSPA5 (9q33.3)LRRC37B (17q11.2) / COL18A1 (21q22.3)
COL18A1 21q22.3 / ADARB1 21q22.3COL18A1 21q22.3 / HSPA5 9q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)COL18A1   2195
Cards
Entrez_Gene (NCBI)COL18A1    collagen type XVIII alpha 1 chain
AliasesGLCC; KNO; KNO1; KS
GeneCards (Weizmann)COL18A1
Ensembl hg19 (Hinxton)ENSG00000182871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182871 [Gene_View]  ENSG00000182871 [Sequence]  chr21:45405165-45513720 [Contig_View]  COL18A1 [Vega]
ICGC DataPortalENSG00000182871
TCGA cBioPortalCOL18A1
AceView (NCBI)COL18A1
Genatlas (Paris)COL18A1
SOURCE (Princeton)COL18A1
Genetics Home Reference (NIH)COL18A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL18A1  -     chr21:45405165-45513720 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL18A1  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathCOL18A1 - 21q22.3 [CytoView hg19]  COL18A1 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000182871
Genome Data Viewer NCBICOL18A1 [Mapview hg19]  
OMIM120328   267750   618880   
Gene and transcription
Genbank (Entrez)AF018081 AF018082 AF184060 AF333246 AF333247
RefSeq transcript (Entrez)NM_001379500 NM_030582 NM_130444 NM_130445
Consensus coding sequences : CCDS (NCBI)COL18A1
Gene ExpressionCOL18A1 [ NCBI-GEO ]   COL18A1 [ EBI - ARRAY_EXPRESS ]   COL18A1 [ SEEK ]   COL18A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL18A1 [ Firebrowse - Broad ]
GenevisibleExpression of COL18A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80781
GTEX Portal (Tissue expression)COL18A1
Human Protein AtlasENSG00000182871-COL18A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL18A1
Human Protein Atlas [tissue]ENSG00000182871-COL18A1 [tissue]
HPRD00382
Protein Interaction databases
BioGRIDCOL18A1
STRING (EMBL)COL18A1
ZODIACCOL18A1
Ontologies - Pathways
Litterature
PubMed224 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOL18A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:42 CEST 2021

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