Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COL1A2-AS1 (COL1A2 antisense RNA 1)


Alias (NCBI)TCONS_00013888
HGNC (Hugo) COL1A2-AS1
HGNC Alias symbTCONS_00013888
LocusID (NCBI) 101927525
Atlas_Id 79979
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 94367212 and ends at 94392192 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)COL1A2-AS1   53133
Entrez_Gene (NCBI)COL1A2-AS1    COL1A2 antisense RNA 1
AliasesTCONS_00013888; lncRNA8975-1
GeneCards (Weizmann)COL1A2-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:94367212-94392192 [Contig_View]  COL1A2-AS1 [Vega]
TCGA cBioPortalCOL1A2-AS1
AceView (NCBI)COL1A2-AS1
Genatlas (Paris)COL1A2-AS1
SOURCE (Princeton)COL1A2-AS1
Genetics Home Reference (NIH)COL1A2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)COL1A2-AS1  -     chr7:94367212-94392192 -  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL1A2-AS1  -     7q21.3   [Description]    (hg19-Feb_2009)
GoldenPathCOL1A2-AS1 - 7q21.3 [CytoView hg19]  COL1A2-AS1 - 7q21.3 [CytoView hg38]
Genome Data Viewer NCBICOL1A2-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)DA422275 OA988910
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)COL1A2-AS1
Gene ExpressionCOL1A2-AS1 [ NCBI-GEO ]   COL1A2-AS1 [ EBI - ARRAY_EXPRESS ]   COL1A2-AS1 [ SEEK ]   COL1A2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL1A2-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of COL1A2-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101927525
GTEX Portal (Tissue expression)COL1A2-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL1A2-AS1
Protein Interaction databases
Ontologies - Pathways
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:46:31 CEST 2021

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