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COL26A1 (collagen type XXVI alpha 1 chain)

Identity

Alias_namesEMID2
EMI domain containing 2
collagen, type XXVI, alpha 1
Alias_symbol (synonym)Emu2
EMI6
Other aliasEMU2
SH2B
HGNC (Hugo) COL26A1
LocusID (NCBI) 136227
Atlas_Id 54228
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101362820 and ends at 101559024 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL26A1 (7q22.1) / BET1 (7q21.3)COL26A1 (7q22.1) / COL26A1 (7q22.1)COL26A1 (7q22.1) / CTXN1 (19p13.2)
COL26A1 (7q22.1) / GGCT (7p14.3)COL26A1 (7q22.1) / SNX12 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL26A1   18038
Cards
Entrez_Gene (NCBI)COL26A1  136227  collagen type XXVI alpha 1 chain
AliasesEMI6; EMID2; EMU2; SH2B
GeneCards (Weizmann)COL26A1
Ensembl hg19 (Hinxton)ENSG00000160963 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160963 [Gene_View]  chr7:101362820-101559024 [Contig_View]  COL26A1 [Vega]
ICGC DataPortalENSG00000160963
TCGA cBioPortalCOL26A1
AceView (NCBI)COL26A1
Genatlas (Paris)COL26A1
WikiGenes136227
SOURCE (Princeton)COL26A1
Genetics Home Reference (NIH)COL26A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL26A1  -     chr7:101362820-101559024 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL26A1  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblCOL26A1 - 7q22.1 [CytoView hg19]  COL26A1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBICOL26A1 [Mapview hg19]  COL26A1 [Mapview hg38]
OMIM608927   
Gene and transcription
Genbank (Entrez)AJ416091 BC040052 BC109254 BC110393 BI549609
RefSeq transcript (Entrez)NM_001278563 NM_133457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL26A1
Cluster EST : UnigeneHs.654854 [ NCBI ]
CGAP (NCI)Hs.654854
Alternative Splicing GalleryENSG00000160963
Gene ExpressionCOL26A1 [ NCBI-GEO ]   COL26A1 [ EBI - ARRAY_EXPRESS ]   COL26A1 [ SEEK ]   COL26A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL26A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136227
GTEX Portal (Tissue expression)COL26A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A83
Splice isoforms : SwissVarQ96A83
PhosPhoSitePlusQ96A83
Domaine pattern : Prosite (Expaxy)EMI (PS51041)   
Domains : Interpro (EBI)Collagen    EMI_domain   
Domain families : Pfam (Sanger)Collagen (PF01391)    EMI (PF07546)   
Domain families : Pfam (NCBI)pfam01391    pfam07546   
Conserved Domain (NCBI)COL26A1
DMDM Disease mutations136227
Blocks (Seattle)COL26A1
PDB (SRS)4AU2    4AU3    4BJ3   
PDB (PDBSum)4AU2    4AU3    4BJ3   
PDB (IMB)4AU2    4AU3    4BJ3   
PDB (RSDB)4AU2    4AU3    4BJ3   
Structural Biology KnowledgeBase4AU2    4AU3    4BJ3   
SCOP (Structural Classification of Proteins)4AU2    4AU3    4BJ3   
CATH (Classification of proteins structures)4AU2    4AU3    4BJ3   
SuperfamilyQ96A83
Human Protein AtlasENSG00000160963
Peptide AtlasQ96A83
HPRD16405
IPIIPI00059297   IPI00374096   
Protein Interaction databases
DIP (DOE-UCLA)Q96A83
IntAct (EBI)Q96A83
FunCoupENSG00000160963
BioGRIDCOL26A1
STRING (EMBL)COL26A1
ZODIACCOL26A1
Ontologies - Pathways
QuickGOQ96A83
Ontology : AmiGOextracellular region  proteinaceous extracellular matrix  collagen trimer  endoplasmic reticulum lumen  Golgi apparatus  plasma membrane  positive regulation of cell-substrate adhesion  collagen catabolic process  extracellular matrix  
Ontology : EGO-EBIextracellular region  proteinaceous extracellular matrix  collagen trimer  endoplasmic reticulum lumen  Golgi apparatus  plasma membrane  positive regulation of cell-substrate adhesion  collagen catabolic process  extracellular matrix  
NDEx NetworkCOL26A1
Atlas of Cancer Signalling NetworkCOL26A1
Wikipedia pathwaysCOL26A1
Orthology - Evolution
OrthoDB136227
GeneTree (enSembl)ENSG00000160963
Phylogenetic Trees/Animal Genes : TreeFamCOL26A1
HOVERGENQ96A83
HOGENOMQ96A83
Homologs : HomoloGeneCOL26A1
Homology/Alignments : Family Browser (UCSC)COL26A1
Gene fusions - Rearrangements
Fusion : MitelmanCOL26A1/BET1 [7q22.1/7q21.3]  
Fusion : MitelmanCOL26A1/GGCT [7q22.1/7p14.3]  [t(7;7)(p14;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOL26A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL26A1
dbVarCOL26A1
ClinVarCOL26A1
1000_GenomesCOL26A1 
Exome Variant ServerCOL26A1
ExAC (Exome Aggregation Consortium)COL26A1 (select the gene name)
Genetic variants : HAPMAP136227
Genomic Variants (DGV)COL26A1 [DGVbeta]
DECIPHERCOL26A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOL26A1 
Mutations
ICGC Data PortalCOL26A1 
TCGA Data PortalCOL26A1 
Broad Tumor PortalCOL26A1
OASIS PortalCOL26A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOL26A1
BioMutasearch COL26A1
DgiDB (Drug Gene Interaction Database)COL26A1
DoCM (Curated mutations)COL26A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COL26A1 (select a term)
intoGenCOL26A1
Cancer3DCOL26A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608927   
Orphanet
MedgenCOL26A1
Genetic Testing Registry COL26A1
NextProtQ96A83 [Medical]
TSGene136227
GENETestsCOL26A1
Target ValidationCOL26A1
Huge Navigator COL26A1 [HugePedia]
snp3D : Map Gene to Disease136227
BioCentury BCIQCOL26A1
ClinGenCOL26A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136227
Chemical/Pharm GKB GenePA134887081
Clinical trialCOL26A1
Miscellaneous
canSAR (ICR)COL26A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL26A1
EVEXCOL26A1
GoPubMedCOL26A1
iHOPCOL26A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:29:07 CEST 2017

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