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COL26A1 (collagen type XXVI alpha 1 chain)

Identity

Alias (NCBI)EMI6
EMID2
EMU2
SH2B
HGNC (Hugo) COL26A1
HGNC Alias symbEmu2
EMI6
HGNC Alias nameEmu2 gene
HGNC Previous nameEMID2
HGNC Previous nameEMI domain containing 2
 collagen, type XXVI, alpha 1
LocusID (NCBI) 136227
Atlas_Id 54228
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101362820 and ends at 101559024 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL26A1 (7q22.1)::BET1 (7q21.3)COL26A1 (7q22.1)::COL26A1 (7q22.1)COL26A1 (7q22.1)::CTXN1 (19p13.2)
COL26A1 (7q22.1)::GGCT (7p14.3)COL26A1 (7q22.1)::SNX12 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)COL26A1   18038
Cards
Entrez_Gene (NCBI)COL26A1    collagen type XXVI alpha 1 chain
AliasesEMI6; EMID2; EMU2; SH2B
GeneCards (Weizmann)COL26A1
Ensembl hg19 (Hinxton)ENSG00000160963 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160963 [Gene_View]  ENSG00000160963 [Sequence]  chr7:101362820-101559024 [Contig_View]  COL26A1 [Vega]
ICGC DataPortalENSG00000160963
TCGA cBioPortalCOL26A1
AceView (NCBI)COL26A1
Genatlas (Paris)COL26A1
SOURCE (Princeton)COL26A1
Genetics Home Reference (NIH)COL26A1
Genomic and cartography
GoldenPath hg38 (UCSC)COL26A1  -     chr7:101362820-101559024 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL26A1  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCOL26A1 - 7q22.1 [CytoView hg19]  COL26A1 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000160963
Genome Data Viewer NCBICOL26A1 [Mapview hg19]  
OMIM608927   
Gene and transcription
Genbank (Entrez)AJ416091 BC040052 BC109254 BC110393 BI549609
RefSeq transcript (Entrez)NM_001278563 NM_133457
Consensus coding sequences : CCDS (NCBI)COL26A1
Gene ExpressionCOL26A1 [ NCBI-GEO ]   COL26A1 [ EBI - ARRAY_EXPRESS ]   COL26A1 [ SEEK ]   COL26A1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL26A1 [ Firebrowse - Broad ]
GenevisibleExpression of COL26A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136227
GTEX Portal (Tissue expression)COL26A1
Human Protein AtlasENSG00000160963-COL26A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A83
PhosPhoSitePlusQ96A83
Domaine pattern : Prosite (Expaxy)EMI (PS51041)   
Domains : Interpro (EBI)Collagen    EMI_domain   
Domain families : Pfam (Sanger)Collagen (PF01391)    EMI (PF07546)   
Domain families : Pfam (NCBI)pfam01391    pfam07546   
Conserved Domain (NCBI)COL26A1
PDB (RSDB)4AU2    4AU3    4BJ3   
PDB Europe4AU2    4AU3    4BJ3   
PDB (PDBSum)4AU2    4AU3    4BJ3   
PDB (IMB)4AU2    4AU3    4BJ3   
Structural Biology KnowledgeBase4AU2    4AU3    4BJ3   
SCOP (Structural Classification of Proteins)4AU2    4AU3    4BJ3   
CATH (Classification of proteins structures)4AU2    4AU3    4BJ3   
SuperfamilyQ96A83
AlphaFold pdb e-kbQ96A83   
Human Protein Atlas [tissue]ENSG00000160963-COL26A1 [tissue]
HPRD16405
Protein Interaction databases
DIP (DOE-UCLA)Q96A83
IntAct (EBI)Q96A83
BioGRIDCOL26A1
STRING (EMBL)COL26A1
ZODIACCOL26A1
Ontologies - Pathways
QuickGOQ96A83
Ontology : AmiGOextracellular region  collagen trimer  endoplasmic reticulum lumen  Golgi apparatus  plasma membrane  positive regulation of cell-substrate adhesion  collagen-containing extracellular matrix  
Ontology : EGO-EBIextracellular region  collagen trimer  endoplasmic reticulum lumen  Golgi apparatus  plasma membrane  positive regulation of cell-substrate adhesion  collagen-containing extracellular matrix  
NDEx NetworkCOL26A1
Atlas of Cancer Signalling NetworkCOL26A1
Wikipedia pathwaysCOL26A1
Orthology - Evolution
OrthoDB136227
GeneTree (enSembl)ENSG00000160963
Phylogenetic Trees/Animal Genes : TreeFamCOL26A1
Homologs : HomoloGeneCOL26A1
Homology/Alignments : Family Browser (UCSC)COL26A1
Gene fusions - Rearrangements
Fusion : MitelmanCOL26A1::BET1 [7q22.1/7q21.3]  
Fusion : MitelmanCOL26A1::GGCT [7q22.1/7p14.3]  
Fusion : QuiverCOL26A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOL26A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL26A1
dbVarCOL26A1
ClinVarCOL26A1
MonarchCOL26A1
1000_GenomesCOL26A1 
Exome Variant ServerCOL26A1
GNOMAD BrowserENSG00000160963
Varsome BrowserCOL26A1
ACMGCOL26A1 variants
VarityQ96A83
Genomic Variants (DGV)COL26A1 [DGVbeta]
DECIPHERCOL26A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOL26A1 
Mutations
ICGC Data PortalCOL26A1 
TCGA Data PortalCOL26A1 
Broad Tumor PortalCOL26A1
OASIS PortalCOL26A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOL26A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOL26A1
Mutations and Diseases : HGMDCOL26A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCOL26A1
DgiDB (Drug Gene Interaction Database)COL26A1
DoCM (Curated mutations)COL26A1
CIViC (Clinical Interpretations of Variants in Cancer)COL26A1
Cancer3DCOL26A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608927   
Orphanet
DisGeNETCOL26A1
MedgenCOL26A1
Genetic Testing Registry COL26A1
NextProtQ96A83 [Medical]
GENETestsCOL26A1
Target ValidationCOL26A1
Huge Navigator COL26A1 [HugePedia]
ClinGenCOL26A1
Clinical trials, drugs, therapy
MyCancerGenomeCOL26A1
Protein Interactions : CTDCOL26A1
Pharm GKB GenePA134887081
PharosQ96A83
Clinical trialCOL26A1
Miscellaneous
canSAR (ICR)COL26A1
HarmonizomeCOL26A1
ARCHS4COL26A1
DataMed IndexCOL26A1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOL26A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:28:23 CET 2022

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