Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COL4A3BP (-)

Identity

Alias_namescollagen
Alias_symbol (synonym)GPBP
STARD11
CERT
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 10087
Atlas_Id 52833
Location -  [Link to chromosome band ]
Location_base_pair Starts at 75371103 and ends at 75511629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)COL4A3BP  10087  -
Aliases
GeneCards (Weizmann)COL4A3BP
Ensembl hg19 (Hinxton)ENSG00000113163 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113163 [Gene_View]  ENSG00000113163 [Sequence]  chr5:75371103-75511629 [Contig_View]  COL4A3BP [Vega]
ICGC DataPortalENSG00000113163
TCGA cBioPortalCOL4A3BP
AceView (NCBI)COL4A3BP
Genatlas (Paris)COL4A3BP
WikiGenes10087
SOURCE (Princeton)COL4A3BP
Genetics Home Reference (NIH)COL4A3BP
Genomic and cartography
GoldenPath hg38 (UCSC)COL4A3BP  -     chr5:75371103-75511629 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL4A3BP  -     -   [Description]    (hg19-Feb_2009)
GoldenPathCOL4A3BP - - [CytoView hg19]  COL4A3BP - - [CytoView hg38]
ImmunoBaseENSG00000113163
Mapping of homologs : NCBICOL4A3BP [Mapview hg19]  COL4A3BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL4A3BP
Alternative Splicing GalleryENSG00000113163
Gene ExpressionCOL4A3BP [ NCBI-GEO ]   COL4A3BP [ EBI - ARRAY_EXPRESS ]   COL4A3BP [ SEEK ]   COL4A3BP [ MEM ]
Gene Expression Viewer (FireBrowse)COL4A3BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10087
GTEX Portal (Tissue expression)COL4A3BP
Human Protein AtlasENSG00000113163-COL4A3BP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL4A3BP
DMDM Disease mutations10087
Blocks (Seattle)COL4A3BP
Human Protein Atlas [tissue]ENSG00000113163-COL4A3BP [tissue]
HPRD05246
IPIIPI00024701   IPI00182914   IPI00657692   IPI00964526   IPI00964762   
Protein Interaction databases
FunCoupENSG00000113163
BioGRIDCOL4A3BP
STRING (EMBL)COL4A3BP
ZODIACCOL4A3BP
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease10087
BioCentury BCIQCOL4A3BP
ClinGenCOL4A3BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10087
Clinical trialCOL4A3BP
Miscellaneous
canSAR (ICR)COL4A3BP (select the gene name)
DataMed IndexCOL4A3BP
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL4A3BP
EVEXCOL4A3BP
GoPubMedCOL4A3BP
iHOPCOL4A3BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 15:29:39 CEST 2019

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