Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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COL4A6 (collagen, type IV, alpha 6)


Other namesCXDELq22.3
HGNC (Hugo) COL4A6
LocusID (NCBI) 1288
Location Xq22.3
Location_base_pair Starts at 107398837 and ends at 107681660 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)COL4A6   2208
Entrez_Gene (NCBI)COL4A6  1288  collagen, type IV, alpha 6
GeneCards (Weizmann)COL4A6
Ensembl hg19 (Hinxton)ENSG00000197565 [Gene_View]  chrX:107398837-107681660 [Contig_View]  COL4A6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197565 [Gene_View]  chrX:107398837-107681660 [Contig_View]  COL4A6 [Vega]
ICGC DataPortalENSG00000197565
AceView (NCBI)COL4A6
Genatlas (Paris)COL4A6
SOURCE (Princeton)COL4A6
Genomic and cartography
GoldenPath hg19 (UCSC)COL4A6  -     chrX:107398837-107681660 -  Xq22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COL4A6  -     Xq22.3   [Description]    (hg38-Dec_2013)
EnsemblCOL4A6 - Xq22.3 [CytoView hg19]  COL4A6 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBICOL4A6 [Mapview hg19]  COL4A6 [Mapview hg38]
OMIM300914   303631   
Gene and transcription
Genbank (Entrez)AK300502 AW082083 BC000874 BC005305 BC070203
RefSeq transcript (Entrez)NM_001287758 NM_001287759 NM_001287760 NM_001847 NM_033641
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012059 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)COL4A6
Cluster EST : UnigeneHs.145586 [ NCBI ]
CGAP (NCI)Hs.145586
Alternative Splicing : Fast-db (Paris)GSHG0032265
Alternative Splicing GalleryENSG00000197565
Gene ExpressionCOL4A6 [ NCBI-GEO ]     COL4A6 [ SEEK ]   COL4A6 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14031 (Uniprot)
NextProtQ14031  [Medical]
With graphics : InterProQ14031
Splice isoforms : SwissVarQ14031 (Swissvar)
Domaine pattern : Prosite (Expaxy)NC1_IV (PS51403)   
Domains : Interpro (EBI)C-type_lectin_fold    Collagen    Collagen_VI_NC   
Related proteins : CluSTrQ14031
Domain families : Pfam (Sanger)C4 (PF01413)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam01413    pfam01391   
Domain families : Smart (EMBL)C4 (SM00111)  
DMDM Disease mutations1288
Blocks (Seattle)Q14031
Human Protein AtlasENSG00000197565
Peptide AtlasQ14031
IPIIPI00514030   IPI00472200   IPI00871740   IPI00910835   IPI01014952   IPI01013871   IPI00922220   IPI00478108   
Protein Interaction databases
IntAct (EBI)Q14031
Ontologies - Pathways
Ontology : AmiGOextracellular matrix structural constituent  extracellular region  collagen type IV trimer  endoplasmic reticulum lumen  cell adhesion  extracellular matrix disassembly  extracellular matrix organization  collagen catabolic process  
Ontology : EGO-EBIextracellular matrix structural constituent  extracellular region  collagen type IV trimer  endoplasmic reticulum lumen  cell adhesion  extracellular matrix disassembly  extracellular matrix organization  collagen catabolic process  
Pathways : BIOCARTAAcute Myocardial Infarction [Genes]    Platelet Amyloid Precursor Protein Pathway [Genes]    Intrinsic Prothrombin Activation Pathway [Genes]    Regulators of Bone Mineralization [Genes]    Angiotensin-converting enzyme 2 regulates heart function [Genes]    Vitamin C in the Brain [Genes]   
Pathways : KEGGPI3K-Akt signaling pathway    Focal adhesion    ECM-receptor interaction    Protein digestion and absorption    Amoebiasis    Pathways in cancer    Small cell lung cancer   
Protein Interaction DatabaseCOL4A6
DoCM (Curated mutations)COL4A6
Wikipedia pathwaysCOL4A6
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCOL4A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL4A6
Exome Variant ServerCOL4A6
SNP (GeneSNP Utah)COL4A6
Genetic variants : HAPMAPCOL4A6
Genomic Variants (DGV)COL4A6 [DGVbeta]
ICGC Data PortalENSG00000197565 
Somatic Mutations in Cancer : COSMICCOL4A6 
CONAN: Copy Number AnalysisCOL4A6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Collagen, type IV, alpha
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)X:107398837-107681660
Mutations and Diseases : HGMDCOL4A6
OMIM300914    303631   
NextProtQ14031 [Medical]
Disease Genetic AssociationCOL4A6
Huge Navigator COL4A6 [HugePedia]  COL4A6 [HugeCancerGEM]
snp3D : Map Gene to Disease1288
DGIdb (Drug Gene Interaction db)COL4A6
General knowledge
Homologs : HomoloGeneCOL4A6
Homology/Alignments : Family Browser (UCSC)COL4A6
Phylogenetic Trees/Animal Genes : TreeFamCOL4A6
Chemical/Protein Interactions : CTD1288
Chemical/Pharm GKB GenePA26723
Clinical trialCOL4A6
Cancer Resource (Charite)ENSG00000197565
Other databases
PubMed52 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:05:31 CET 2015

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