COL4A6 (collagen type IV alpha 6 chain)

2003-12-01  

Identity

HGNC
LOCATION
Xq22.3
LOCUSID
ALIAS
CXDELq22.3,DELXq22.3,DFNX6
FUSION GENES

Other Information

Locus ID:

NCBI: 1288
MIM: 303631
HGNC: 2208
Ensembl: ENSG00000197565

Variants:

dbSNP: 1288
ClinVar: 1288
TCGA: ENSG00000197565
COSMIC: COL4A6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000197565ENST00000334504Q14031
ENSG00000197565ENST00000372216Q14031
ENSG00000197565ENST00000394872A8MXH5
ENSG00000197565ENST00000538570F5H3Q5
ENSG00000197565ENST00000545689F5H851
ENSG00000197565ENST00000621266A0A087WZY5

Expression (GTEx)

0
50
100
150
200

Pathways

PathwaySourceExternal ID
Focal adhesionKEGGko04510
ECM-receptor interactionKEGGko04512
Small cell lung cancerKEGGko05222
Focal adhesionKEGGhsa04510
ECM-receptor interactionKEGGhsa04512
Pathways in cancerKEGGhsa05200
Small cell lung cancerKEGGhsa05222
AmoebiasisKEGGko05146
AmoebiasisKEGGhsa05146
Protein digestion and absorptionKEGGko04974
Protein digestion and absorptionKEGGhsa04974
PI3K-Akt signaling pathwayKEGGhsa04151
PI3K-Akt signaling pathwayKEGGko04151
Extracellular matrix organizationREACTOMER-HSA-1474244
Collagen formationREACTOMER-HSA-1474290
Collagen biosynthesis and modifying enzymesREACTOMER-HSA-1650814
Assembly of collagen fibrils and other multimeric structuresREACTOMER-HSA-2022090
AGE-RAGE signaling pathway in diabetic complicationsKEGGko04933
AGE-RAGE signaling pathway in diabetic complicationsKEGGhsa04933
Collagen chain trimerizationREACTOMER-HSA-8948216

References

Pubmed IDYearTitleCitations
338408132022Confirmation of COL4A6 variants in X-linked nonsyndromic hearing loss and its clinical implications.3
338408132022Confirmation of COL4A6 variants in X-linked nonsyndromic hearing loss and its clinical implications.3
294225322018Type IV collagen α6 chain is a regulator of keratin 10 in keratinization of oral mucosal epithelium.16
294225322018Type IV collagen α6 chain is a regulator of keratin 10 in keratinization of oral mucosal epithelium.16
282752412017Characterization of contiguous gene deletions in COL4A6 and COL4A5 in Alport syndrome-diffuse leiomyomatosis.11
282752412017Characterization of contiguous gene deletions in COL4A6 and COL4A5 in Alport syndrome-diffuse leiomyomatosis.11
268114942016Genetic alterations and their clinical implications in gastric cancer peritoneal carcinomatosis revealed by whole-exome sequencing of malignant ascites.22
273777782016COL4A6 is dispensable for autosomal recessive Alport syndrome.12
268114942016Genetic alterations and their clinical implications in gastric cancer peritoneal carcinomatosis revealed by whole-exome sequencing of malignant ascites.22
273777782016COL4A6 is dispensable for autosomal recessive Alport syndrome.12
261798782015Chinese family with diffuse oesophageal leiomyomatosis: a new COL4A5/COL4A6 deletion and a case of gonosomal mosaicism.5
261798782015Chinese family with diffuse oesophageal leiomyomatosis: a new COL4A5/COL4A6 deletion and a case of gonosomal mosaicism.5
235511892014Angiogenesis and collagen type IV expression in different endothelial cell culture systems.15
237147522014Novel form of X-linked nonsyndromic hearing loss with cochlear malformation caused by a mutation in the type IV collagen gene COL4A6.25
235511892014Angiogenesis and collagen type IV expression in different endothelial cell culture systems.15

Citation

Dessen P

COL4A6 (collagen type IV alpha 6 chain)

Atlas Genet Cytogenet Oncol Haematol. 2003-12-01

Online version: http://atlasgeneticsoncology.org/gene/40127/col4a6