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COL5A1-AS1 (COL5A1 antisense RNA 1)

Identity

Other aliasC9orf104
bA54A22.4
HGNC (Hugo) COL5A1-AS1
LocusID (NCBI) 414316
Atlas_Id 78657
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137541231 and ends at 137544689 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)COL5A1-AS1   31368
Cards
Entrez_Gene (NCBI)COL5A1-AS1  414316  COL5A1 antisense RNA 1
AliasesC9orf104; bA54A22.4
GeneCards (Weizmann)COL5A1-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr9:137541231-137544689 [Contig_View]  COL5A1-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:137541231-137544689 [Contig_View]  COL5A1-AS1 [Vega]
TCGA cBioPortalCOL5A1-AS1
AceView (NCBI)COL5A1-AS1
Genatlas (Paris)COL5A1-AS1
WikiGenes414316
SOURCE (Princeton)COL5A1-AS1
Genetics Home Reference (NIH)COL5A1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)COL5A1-AS1  -     chr9:137541231-137544689 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COL5A1-AS1  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblCOL5A1-AS1 - 9q34.3 [CytoView hg19]  COL5A1-AS1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBICOL5A1-AS1 [Mapview hg19]  COL5A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI798815 CR748640 HG502525
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL5A1-AS1
Cluster EST : UnigeneHs.571561 [ NCBI ]
CGAP (NCI)Hs.571561
Gene ExpressionCOL5A1-AS1 [ NCBI-GEO ]   COL5A1-AS1 [ EBI - ARRAY_EXPRESS ]   COL5A1-AS1 [ SEEK ]   COL5A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL5A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414316
GTEX Portal (Tissue expression)COL5A1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY13
Splice isoforms : SwissVarQ5SY13
PhosPhoSitePlusQ5SY13
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL5A1-AS1
DMDM Disease mutations414316
Blocks (Seattle)COL5A1-AS1
SuperfamilyQ5SY13
Peptide AtlasQ5SY13
IPIIPI00514054   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY13
IntAct (EBI)Q5SY13
BioGRIDCOL5A1-AS1
STRING (EMBL)COL5A1-AS1
ZODIACCOL5A1-AS1
Ontologies - Pathways
QuickGOQ5SY13
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCOL5A1-AS1
Atlas of Cancer Signalling NetworkCOL5A1-AS1
Wikipedia pathwaysCOL5A1-AS1
Orthology - Evolution
OrthoDB414316
Phylogenetic Trees/Animal Genes : TreeFamCOL5A1-AS1
HOVERGENQ5SY13
HOGENOMQ5SY13
Homologs : HomoloGeneCOL5A1-AS1
Homology/Alignments : Family Browser (UCSC)COL5A1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOL5A1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COL5A1-AS1
dbVarCOL5A1-AS1
ClinVarCOL5A1-AS1
1000_GenomesCOL5A1-AS1 
Exome Variant ServerCOL5A1-AS1
ExAC (Exome Aggregation Consortium)COL5A1-AS1 (select the gene name)
Genetic variants : HAPMAP414316
Genomic Variants (DGV)COL5A1-AS1 [DGVbeta]
DECIPHER (Syndromes)9:137541231-137544689  
CONAN: Copy Number AnalysisCOL5A1-AS1 
Mutations
ICGC Data PortalCOL5A1-AS1 
TCGA Data PortalCOL5A1-AS1 
Broad Tumor PortalCOL5A1-AS1
OASIS PortalCOL5A1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOL5A1-AS1
BioMutasearch COL5A1-AS1
DgiDB (Drug Gene Interaction Database)COL5A1-AS1
DoCM (Curated mutations)COL5A1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COL5A1-AS1 (select a term)
intoGenCOL5A1-AS1
Cancer3DCOL5A1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCOL5A1-AS1
Genetic Testing Registry COL5A1-AS1
NextProtQ5SY13 [Medical]
TSGene414316
GENETestsCOL5A1-AS1
Huge Navigator COL5A1-AS1 [HugePedia]
snp3D : Map Gene to Disease414316
BioCentury BCIQCOL5A1-AS1
ClinGenCOL5A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414316
Chemical/Pharm GKB GenePA134922444
Clinical trialCOL5A1-AS1
Miscellaneous
canSAR (ICR)COL5A1-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL5A1-AS1
EVEXCOL5A1-AS1
GoPubMedCOL5A1-AS1
iHOPCOL5A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:59 CET 2017

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