Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COL6A4P1 (collagen type VI alpha 4 pseudogene 1)

Identity

Alias_namesDVWA
dual von Willebrand factor A domains
collagen, type VI, alpha 4 pseudogene 1
Alias_symbol (synonym)VWA6
DIVA
COL6A4
COL6A4P
Other alias
HGNC (Hugo) COL6A4P1
LocusID (NCBI) 344875
Atlas_Id 61997
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 15165362 and ends at 15205959 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL6A4P1   33484
Cards
Entrez_Gene (NCBI)COL6A4P1  344875  collagen type VI alpha 4 pseudogene 1
AliasesCOL6A4; COL6A4P; DIVA; DVWA; 
VWA6
GeneCards (Weizmann)COL6A4P1
Ensembl hg19 (Hinxton)ENSG00000230524 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230524 [Gene_View]  chr3:15165362-15205959 [Contig_View]  COL6A4P1 [Vega]
ICGC DataPortalENSG00000230524
TCGA cBioPortalCOL6A4P1
AceView (NCBI)COL6A4P1
Genatlas (Paris)COL6A4P1
WikiGenes344875
SOURCE (Princeton)COL6A4P1
Genetics Home Reference (NIH)COL6A4P1
Genomic and cartography
GoldenPath hg38 (UCSC)COL6A4P1  -     chr3:15165362-15205959 -  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL6A4P1  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblCOL6A4P1 - 3p25.1 [CytoView hg19]  COL6A4P1 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBICOL6A4P1 [Mapview hg19]  COL6A4P1 [Mapview hg38]
OMIM612397   
Gene and transcription
Genbank (Entrez)AB299979 FN394065
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL6A4P1
Cluster EST : UnigeneHs.722756 [ NCBI ]
CGAP (NCI)Hs.722756
Alternative Splicing GalleryENSG00000230524
Gene ExpressionCOL6A4P1 [ NCBI-GEO ]   COL6A4P1 [ EBI - ARRAY_EXPRESS ]   COL6A4P1 [ SEEK ]   COL6A4P1 [ MEM ]
Gene Expression Viewer (FireBrowse)COL6A4P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)344875
GTEX Portal (Tissue expression)COL6A4P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL6A4P1
DMDM Disease mutations344875
Blocks (Seattle)COL6A4P1
Human Protein AtlasENSG00000230524
IPIIPI00454858   
Protein Interaction databases
FunCoupENSG00000230524
BioGRIDCOL6A4P1
STRING (EMBL)COL6A4P1
ZODIACCOL6A4P1
Ontologies - Pathways
Huge Navigator COL6A4P1 [HugePedia]
snp3D : Map Gene to Disease344875
BioCentury BCIQCOL6A4P1
ClinGenCOL6A4P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344875
Clinical trialCOL6A4P1
Miscellaneous
canSAR (ICR)COL6A4P1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL6A4P1
EVEXCOL6A4P1
GoPubMedCOL6A4P1
iHOPCOL6A4P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:13 CEST 2017

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