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COL6A4P2 (collagen type VI alpha 4 pseudogene 2)

Identity

Alias_namescollagen, type VI, alpha 4 pseudogene 2
Alias_symbol (synonym)COL6A4
Other alias
HGNC (Hugo) COL6A4P2
LocusID (NCBI) 646300
Atlas_Id 61998
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 130212820 and ends at 130273806 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COL6A4P2   38501
Cards
Entrez_Gene (NCBI)COL6A4P2  646300  collagen type VI alpha 4 pseudogene 2
AliasesCOL6A4
GeneCards (Weizmann)COL6A4P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:130212820-130273806 [Contig_View]  COL6A4P2 [Vega]
TCGA cBioPortalCOL6A4P2
AceView (NCBI)COL6A4P2
Genatlas (Paris)COL6A4P2
WikiGenes646300
SOURCE (Princeton)COL6A4P2
Genetics Home Reference (NIH)COL6A4P2
Genomic and cartography
GoldenPath hg38 (UCSC)COL6A4P2  -     chr3:130212820-130273806 +  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COL6A4P2  -     3q22.1   [Description]    (hg19-Feb_2009)
EnsemblCOL6A4P2 - 3q22.1 [CytoView hg19]  COL6A4P2 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBICOL6A4P2 [Mapview hg19]  COL6A4P2 [Mapview hg38]
OMIM616612   
Gene and transcription
Genbank (Entrez)BF593933 CN285077 DR731426 DV080502 EG328528
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COL6A4P2
Cluster EST : UnigeneHs.170475 [ NCBI ]
CGAP (NCI)Hs.170475
Gene ExpressionCOL6A4P2 [ NCBI-GEO ]   COL6A4P2 [ EBI - ARRAY_EXPRESS ]   COL6A4P2 [ SEEK ]   COL6A4P2 [ MEM ]
Gene Expression Viewer (FireBrowse)COL6A4P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)646300
GTEX Portal (Tissue expression)COL6A4P2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COL6A4P2
DMDM Disease mutations646300
Blocks (Seattle)COL6A4P2
Protein Interaction databases
BioGRIDCOL6A4P2
STRING (EMBL)COL6A4P2
ZODIACCOL6A4P2
Ontologies - Pathways
Huge Navigator COL6A4P2 [HugePedia]
snp3D : Map Gene to Disease646300
BioCentury BCIQCOL6A4P2
ClinGenCOL6A4P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646300
Clinical trialCOL6A4P2
Miscellaneous
canSAR (ICR)COL6A4P2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOL6A4P2
EVEXCOL6A4P2
GoPubMedCOL6A4P2
iHOPCOL6A4P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:15 CET 2017

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