Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COLCA1 (colorectal cancer associated 1)

Identity

Alias_namesC11orf92
chromosome 11 open reading frame 92
Alias_symbol (synonym)FLJ45803
CASC12
Other aliasLOH11CR1F
HGNC (Hugo) COLCA1
LocusID (NCBI) 399948
Atlas_Id 53511
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111293389 and ends at 111299896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B3GALNT1 (3q26.1) / COLCA1 (11q23.1)COLCA1 (11q23.1) / COLCA1 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;11)(q26;q23) B3GALNT1/COLCA1

External links

Nomenclature
HGNC (Hugo)COLCA1   33789
Cards
Entrez_Gene (NCBI)COLCA1  399948  colorectal cancer associated 1
AliasesC11orf92; CASC12; LOH11CR1F
GeneCards (Weizmann)COLCA1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:111293389-111299896 [Contig_View]  COLCA1 [Vega]
TCGA cBioPortalCOLCA1
AceView (NCBI)COLCA1
Genatlas (Paris)COLCA1
WikiGenes399948
SOURCE (Princeton)COLCA1
Genetics Home Reference (NIH)COLCA1
Genomic and cartography
GoldenPath hg38 (UCSC)COLCA1  -     chr11:111293389-111299896 -  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COLCA1  -     11q23.1   [Description]    (hg19-Feb_2009)
GoldenPathCOLCA1 - 11q23.1 [CytoView hg19]  COLCA1 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBICOLCA1 [Mapview hg19]  COLCA1 [Mapview hg38]
OMIM615693   
Gene and transcription
Genbank (Entrez)AA470052 AB096245 AK127703 CR936778 HY007252
RefSeq transcript (Entrez)NM_001302644 NM_001302645 NM_001302646 NM_001302647 NM_001302648 NM_207429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COLCA1
Cluster EST : UnigeneHs.729225 [ NCBI ]
CGAP (NCI)Hs.729225
Gene ExpressionCOLCA1 [ NCBI-GEO ]   COLCA1 [ EBI - ARRAY_EXPRESS ]   COLCA1 [ SEEK ]   COLCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)COLCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399948
GTEX Portal (Tissue expression)COLCA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS62
Splice isoforms : SwissVarQ6ZS62
PhosPhoSitePlusQ6ZS62
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COLCA1
DMDM Disease mutations399948
Blocks (Seattle)COLCA1
SuperfamilyQ6ZS62
Peptide AtlasQ6ZS62
HPRD13513
IPIIPI00410504   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS62
IntAct (EBI)Q6ZS62
BioGRIDCOLCA1
STRING (EMBL)COLCA1
ZODIACCOLCA1
Ontologies - Pathways
QuickGOQ6ZS62
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkCOLCA1
Atlas of Cancer Signalling NetworkCOLCA1
Wikipedia pathwaysCOLCA1
Orthology - Evolution
OrthoDB399948
Phylogenetic Trees/Animal Genes : TreeFamCOLCA1
HOGENOMQ6ZS62
Homologs : HomoloGeneCOLCA1
Homology/Alignments : Family Browser (UCSC)COLCA1
Gene fusions - Rearrangements
Fusion : QuiverCOLCA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOLCA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COLCA1
dbVarCOLCA1
ClinVarCOLCA1
1000_GenomesCOLCA1 
Exome Variant ServerCOLCA1
Varsome BrowserCOLCA1
Genetic variants : HAPMAP399948
Genomic Variants (DGV)COLCA1 [DGVbeta]
DECIPHERCOLCA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOLCA1 
Mutations
ICGC Data PortalCOLCA1 
TCGA Data PortalCOLCA1 
Broad Tumor PortalCOLCA1
OASIS PortalCOLCA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOLCA1
BioMutasearch COLCA1
DgiDB (Drug Gene Interaction Database)COLCA1
DoCM (Curated mutations)COLCA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COLCA1 (select a term)
intoGenCOLCA1
Cancer3DCOLCA1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615693   
Orphanet
DisGeNETCOLCA1
MedgenCOLCA1
Genetic Testing Registry COLCA1
NextProtQ6ZS62 [Medical]
TSGene399948
GENETestsCOLCA1
Target ValidationCOLCA1
Huge Navigator COLCA1 [HugePedia]
snp3D : Map Gene to Disease399948
BioCentury BCIQCOLCA1
ClinGenCOLCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399948
Chemical/Pharm GKB GenePA164716768
Clinical trialCOLCA1
Miscellaneous
canSAR (ICR)COLCA1 (select the gene name)
DataMed IndexCOLCA1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOLCA1
EVEXCOLCA1
GoPubMedCOLCA1
iHOPCOLCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 8 11:15:46 CEST 2019
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