Atlas of Genetics and Cytogenetics in Oncology and Haematology

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COLCA2 (colorectal cancer associated 2)

Identity

Alias_namesC11orf93
chromosome 11 open reading frame 93
Alias_symbol (synonym)CASC13
Other aliasLOH11CR1G
HGNC (Hugo) COLCA2
LocusID (NCBI) 120376
Atlas_Id 53526
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111298546 and ends at 111308735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COLCA2 (11q23.1) / HYOU1 (11q23.3)HYOU1 (11q23.3) / COLCA2 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Lung: Translocations in Adenocarcinoma
HYOU1/COLCA2 (11q23)

External links

Nomenclature
HGNC (Hugo)COLCA2   26978
Cards
Entrez_Gene (NCBI)COLCA2  120376  colorectal cancer associated 2
AliasesC11orf93; CASC13; LOH11CR1G
GeneCards (Weizmann)COLCA2
Ensembl hg19 (Hinxton)ENSG00000214290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214290 [Gene_View]  ENSG00000214290 [Sequence]  chr11:111298546-111308735 [Contig_View]  COLCA2 [Vega]
ICGC DataPortalENSG00000214290
TCGA cBioPortalCOLCA2
AceView (NCBI)COLCA2
Genatlas (Paris)COLCA2
WikiGenes120376
SOURCE (Princeton)COLCA2
Genetics Home Reference (NIH)COLCA2
Genomic and cartography
GoldenPath hg38 (UCSC)COLCA2  -     chr11:111298546-111308735 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COLCA2  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblCOLCA2 - 11q23.1 [CytoView hg19]  COLCA2 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBICOLCA2 [Mapview hg19]  COLCA2 [Mapview hg38]
OMIM615694   
Gene and transcription
Genbank (Entrez)AB096246 AK292195 BC042557 BC110079 BF811304
RefSeq transcript (Entrez)NM_001136105 NM_001271457 NM_001271458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COLCA2
Cluster EST : UnigeneHs.744538 [ NCBI ]
CGAP (NCI)Hs.744538
Alternative Splicing GalleryENSG00000214290
Gene ExpressionCOLCA2 [ NCBI-GEO ]   COLCA2 [ EBI - ARRAY_EXPRESS ]   COLCA2 [ SEEK ]   COLCA2 [ MEM ]
Gene Expression Viewer (FireBrowse)COLCA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120376
GTEX Portal (Tissue expression)COLCA2
Human Protein AtlasENSG00000214290-COLCA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K830   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K830  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K830
Splice isoforms : SwissVarA8K830
PhosPhoSitePlusA8K830
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)COLCA2
DMDM Disease mutations120376
Blocks (Seattle)COLCA2
SuperfamilyA8K830
Human Protein Atlas [tissue]ENSG00000214290-COLCA2 [tissue]
Peptide AtlasA8K830
IPIIPI00914605   IPI00976430   
Protein Interaction databases
DIP (DOE-UCLA)A8K830
IntAct (EBI)A8K830
FunCoupENSG00000214290
BioGRIDCOLCA2
STRING (EMBL)COLCA2
ZODIACCOLCA2
Ontologies - Pathways
QuickGOA8K830
Ontology : AmiGOcytoplasm  cytoplasm  
Ontology : EGO-EBIcytoplasm  cytoplasm  
NDEx NetworkCOLCA2
Atlas of Cancer Signalling NetworkCOLCA2
Wikipedia pathwaysCOLCA2
Orthology - Evolution
OrthoDB120376
GeneTree (enSembl)ENSG00000214290
Phylogenetic Trees/Animal Genes : TreeFamCOLCA2
HOVERGENA8K830
HOGENOMA8K830
Homologs : HomoloGeneCOLCA2
Homology/Alignments : Family Browser (UCSC)COLCA2
Gene fusions - Rearrangements
Fusion : MitelmanHYOU1/COLCA2 [11q23.3/11q23.1]  [t(11;11)(q23;q23)]  
Fusion : QuiverCOLCA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOLCA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COLCA2
dbVarCOLCA2
ClinVarCOLCA2
1000_GenomesCOLCA2 
Exome Variant ServerCOLCA2
ExAC (Exome Aggregation Consortium)ENSG00000214290
GNOMAD BrowserENSG00000214290
Varsome BrowserCOLCA2
Genetic variants : HAPMAP120376
Genomic Variants (DGV)COLCA2 [DGVbeta]
DECIPHERCOLCA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOLCA2 
Mutations
ICGC Data PortalCOLCA2 
TCGA Data PortalCOLCA2 
Broad Tumor PortalCOLCA2
OASIS PortalCOLCA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCOLCA2
BioMutasearch COLCA2
DgiDB (Drug Gene Interaction Database)COLCA2
DoCM (Curated mutations)COLCA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COLCA2 (select a term)
intoGenCOLCA2
Cancer3DCOLCA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615694   
Orphanet
DisGeNETCOLCA2
MedgenCOLCA2
Genetic Testing Registry COLCA2
NextProtA8K830 [Medical]
TSGene120376
GENETestsCOLCA2
Target ValidationCOLCA2
Huge Navigator COLCA2 [HugePedia]
snp3D : Map Gene to Disease120376
BioCentury BCIQCOLCA2
ClinGenCOLCA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120376
Chemical/Pharm GKB GenePA165543240
Clinical trialCOLCA2
Miscellaneous
canSAR (ICR)COLCA2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOLCA2
EVEXCOLCA2
GoPubMedCOLCA2
iHOPCOLCA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:16:35 CEST 2018
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