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COLEC10 (collectin subfamily member 10)

Identity

Alias_namescollectin sub-family member 10 (C-type lectin)
Alias_symbol (synonym)CL-L1
Other alias3MC3
CL-34
CLL1
HGNC (Hugo) COLEC10
LocusID (NCBI) 10584
Atlas_Id 62005
Location 8q24.12  [Link to chromosome band 8q24]
Location_base_pair Starts at 118952167 and ends at 119108455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COLEC10 (8q24.12) / PKNOX1 (21q22.3)TNFRSF11B (8q24.12) / COLEC10 (8q24.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COLEC10   2220
Cards
Entrez_Gene (NCBI)COLEC10  10584  collectin subfamily member 10
Aliases3MC3; CL-34; CLL1
GeneCards (Weizmann)COLEC10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:118952167-119108455 [Contig_View]  COLEC10 [Vega]
TCGA cBioPortalCOLEC10
AceView (NCBI)COLEC10
Genatlas (Paris)COLEC10
WikiGenes10584
SOURCE (Princeton)COLEC10
Genetics Home Reference (NIH)COLEC10
Genomic and cartography
GoldenPath hg38 (UCSC)COLEC10  -     chr8:118952167-119108455 +  8q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COLEC10  -     8q24.12   [Description]    (hg19-Feb_2009)
EnsemblCOLEC10 - 8q24.12 [CytoView hg19]  COLEC10 - 8q24.12 [CytoView hg38]
Mapping of homologs : NCBICOLEC10 [Mapview hg19]  COLEC10 [Mapview hg38]
OMIM248340   607620   
Gene and transcription
Genbank (Entrez)AB002631 AI417503 AK291791 AY359038 BC103815
RefSeq transcript (Entrez)NM_001324095 NM_006438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COLEC10
Cluster EST : UnigeneHs.176615 [ NCBI ]
CGAP (NCI)Hs.176615
Gene ExpressionCOLEC10 [ NCBI-GEO ]   COLEC10 [ EBI - ARRAY_EXPRESS ]   COLEC10 [ SEEK ]   COLEC10 [ MEM ]
Gene Expression Viewer (FireBrowse)COLEC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10584
GTEX Portal (Tissue expression)COLEC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Z7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Z7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Z7
Splice isoforms : SwissVarQ9Y6Z7
PhosPhoSitePlusQ9Y6Z7
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    Collagen    Collectin_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Collagen (PF01391)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam01391    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)COLEC10
DMDM Disease mutations10584
Blocks (Seattle)COLEC10
SuperfamilyQ9Y6Z7
Peptide AtlasQ9Y6Z7
HPRD07403
IPIIPI00007917   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Z7
IntAct (EBI)Q9Y6Z7
BioGRIDCOLEC10
STRING (EMBL)COLEC10
ZODIACCOLEC10
Ontologies - Pathways
QuickGOQ9Y6Z7
Ontology : AmiGOserine-type endopeptidase activity  mannose binding  extracellular region  collagen trimer  cytoplasm  proteolysis  complement activation  
Ontology : EGO-EBIserine-type endopeptidase activity  mannose binding  extracellular region  collagen trimer  cytoplasm  proteolysis  complement activation  
NDEx NetworkCOLEC10
Atlas of Cancer Signalling NetworkCOLEC10
Wikipedia pathwaysCOLEC10
Orthology - Evolution
OrthoDB10584
Phylogenetic Trees/Animal Genes : TreeFamCOLEC10
HOVERGENQ9Y6Z7
HOGENOMQ9Y6Z7
Homologs : HomoloGeneCOLEC10
Homology/Alignments : Family Browser (UCSC)COLEC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOLEC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COLEC10
dbVarCOLEC10
ClinVarCOLEC10
1000_GenomesCOLEC10 
Exome Variant ServerCOLEC10
ExAC (Exome Aggregation Consortium)COLEC10 (select the gene name)
Genetic variants : HAPMAP10584
Genomic Variants (DGV)COLEC10 [DGVbeta]
DECIPHERCOLEC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOLEC10 
Mutations
ICGC Data PortalCOLEC10 
TCGA Data PortalCOLEC10 
Broad Tumor PortalCOLEC10
OASIS PortalCOLEC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOLEC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOLEC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COLEC10
DgiDB (Drug Gene Interaction Database)COLEC10
DoCM (Curated mutations)COLEC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COLEC10 (select a term)
intoGenCOLEC10
Cancer3DCOLEC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM248340    607620   
Orphanet
MedgenCOLEC10
Genetic Testing Registry COLEC10
NextProtQ9Y6Z7 [Medical]
TSGene10584
GENETestsCOLEC10
Target ValidationCOLEC10
Huge Navigator COLEC10 [HugePedia]
snp3D : Map Gene to Disease10584
BioCentury BCIQCOLEC10
ClinGenCOLEC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10584
Chemical/Pharm GKB GenePA26736
Clinical trialCOLEC10
Miscellaneous
canSAR (ICR)COLEC10 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOLEC10
EVEXCOLEC10
GoPubMedCOLEC10
iHOPCOLEC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:14 CEST 2017

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