Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COLEC11 (collectin sub-family member 11)

Identity

Alias_symbol (synonym)MGC3279
CL-K1
Other alias3MC2
CL-K1-I
CL-K1-II
CL-K1-IIa
CL-K1-IIb
CLK1
HGNC (Hugo) COLEC11
LocusID (NCBI) 78989
Atlas_Id 62006
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3642422 and ends at 3692234 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COLEC11 (2p25.3) / PITPNC1 (17q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COLEC11   17213
LRG (Locus Reference Genomic)LRG_350
Cards
Entrez_Gene (NCBI)COLEC11  78989  collectin sub-family member 11
Aliases3MC2; CL-K1-I; CL-K1-II; CL-K1-IIa; 
CL-K1-IIb; CLK1
GeneCards (Weizmann)COLEC11
Ensembl hg19 (Hinxton)ENSG00000118004 [Gene_View]  chr2:3642422-3692234 [Contig_View]  COLEC11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118004 [Gene_View]  chr2:3642422-3692234 [Contig_View]  COLEC11 [Vega]
ICGC DataPortalENSG00000118004
TCGA cBioPortalCOLEC11
AceView (NCBI)COLEC11
Genatlas (Paris)COLEC11
WikiGenes78989
SOURCE (Princeton)COLEC11
Genetics Home Reference (NIH)COLEC11
Genomic and cartography
GoldenPath hg19 (UCSC)COLEC11  -     chr2:3642422-3692234 +  2p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COLEC11  -     2p25.3   [Description]    (hg38-Dec_2013)
EnsemblCOLEC11 - 2p25.3 [CytoView hg19]  COLEC11 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBICOLEC11 [Mapview hg19]  COLEC11 [Mapview hg38]
OMIM265050   612502   
Gene and transcription
Genbank (Entrez)AB119525 AB119650 AB119651 AB119652 AB119684
RefSeq transcript (Entrez)NM_001255982 NM_001255983 NM_001255984 NM_001255985 NM_001255986 NM_001255987 NM_001255988 NM_001255989 NM_024027 NM_199235
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_031954 NT_005334 NW_004929297
Consensus coding sequences : CCDS (NCBI)COLEC11
Cluster EST : UnigeneHs.735715 [ NCBI ]
CGAP (NCI)Hs.735715
Alternative Splicing GalleryENSG00000118004
Gene ExpressionCOLEC11 [ NCBI-GEO ]   COLEC11 [ EBI - ARRAY_EXPRESS ]   COLEC11 [ SEEK ]   COLEC11 [ MEM ]
Gene Expression Viewer (FireBrowse)COLEC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78989
GTEX Portal (Tissue expression)COLEC11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWP8
Splice isoforms : SwissVarQ9BWP8
PhosPhoSitePlusQ9BWP8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Collagen   
Domain families : Pfam (Sanger)Collagen (PF01391)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam01391    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)COLEC11
DMDM Disease mutations78989
Blocks (Seattle)COLEC11
SuperfamilyQ9BWP8
Human Protein AtlasENSG00000118004
Peptide AtlasQ9BWP8
HPRD10847
IPIIPI00031490   IPI00554598   IPI00880047   IPI00879712   IPI00827697   IPI00868920   IPI00877913   IPI00868874   IPI00385429   IPI00893324   IPI00893831   IPI00893972   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWP8
IntAct (EBI)Q9BWP8
FunCoupENSG00000118004
BioGRIDCOLEC11
STRING (EMBL)COLEC11
ZODIACCOLEC11
Ontologies - Pathways
QuickGOQ9BWP8
Ontology : AmiGOmannose binding  extracellular region  collagen trimer  receptor-mediated endocytosis  multicellular organismal development  developmental process  
Ontology : EGO-EBImannose binding  extracellular region  collagen trimer  receptor-mediated endocytosis  multicellular organismal development  developmental process  
Pathways : KEGGPhagosome   
NDEx NetworkCOLEC11
Atlas of Cancer Signalling NetworkCOLEC11
Wikipedia pathwaysCOLEC11
Orthology - Evolution
OrthoDB78989
GeneTree (enSembl)ENSG00000118004
Phylogenetic Trees/Animal Genes : TreeFamCOLEC11
HOVERGENQ9BWP8
HOGENOMQ9BWP8
Homologs : HomoloGeneCOLEC11
Homology/Alignments : Family Browser (UCSC)COLEC11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOLEC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COLEC11
dbVarCOLEC11
ClinVarCOLEC11
1000_GenomesCOLEC11 
Exome Variant ServerCOLEC11
ExAC (Exome Aggregation Consortium)COLEC11 (select the gene name)
Genetic variants : HAPMAP78989
Genomic Variants (DGV)COLEC11 [DGVbeta]
DECIPHER (Syndromes)2:3642422-3692234  ENSG00000118004
CONAN: Copy Number AnalysisCOLEC11 
Mutations
ICGC Data PortalCOLEC11 
TCGA Data PortalCOLEC11 
Broad Tumor PortalCOLEC11
OASIS PortalCOLEC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOLEC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOLEC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch COLEC11
DgiDB (Drug Gene Interaction Database)COLEC11
DoCM (Curated mutations)COLEC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COLEC11 (select a term)
intoGenCOLEC11
Cancer3DCOLEC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM265050    612502   
Orphanet20879   
MedgenCOLEC11
Genetic Testing Registry COLEC11
NextProtQ9BWP8 [Medical]
TSGene78989
GENETestsCOLEC11
Huge Navigator COLEC11 [HugePedia]
snp3D : Map Gene to Disease78989
BioCentury BCIQCOLEC11
ClinGenCOLEC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78989
Chemical/Pharm GKB GenePA26737
Clinical trialCOLEC11
Miscellaneous
canSAR (ICR)COLEC11 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOLEC11
EVEXCOLEC11
GoPubMedCOLEC11
iHOPCOLEC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:01 CET 2017

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