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COLEC12 (collectin sub-family member 12)

Identity

Alias_symbol (synonym)SRCL
CL-P1
SCARA4
Other aliasCLP1
NSR2
HGNC (Hugo) COLEC12
LocusID (NCBI) 81035
Atlas_Id 62007
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 319355 and ends at 500729 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BIRC6 (2p22.3) / COLEC12 (18p11.32)COLEC12 (18p11.32) / CLUL1 (18p11.32)COLEC12 (18p11.32) / COLEC12 (18p11.32)
TRIM33 (1p13.2) / COLEC12 (18p11.32)ZNF200 (16p13.3) / COLEC12 (18p11.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COLEC12   16016
Cards
Entrez_Gene (NCBI)COLEC12  81035  collectin sub-family member 12
AliasesCLP1; NSR2; SCARA4; SRCL
GeneCards (Weizmann)COLEC12
Ensembl hg19 (Hinxton) [Gene_View]  chr18:319355-500729 [Contig_View]  COLEC12 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:319355-500729 [Contig_View]  COLEC12 [Vega]
TCGA cBioPortalCOLEC12
AceView (NCBI)COLEC12
Genatlas (Paris)COLEC12
WikiGenes81035
SOURCE (Princeton)COLEC12
Genetics Home Reference (NIH)COLEC12
Genomic and cartography
GoldenPath hg19 (UCSC)COLEC12  -     chr18:319355-500729 -  18p11.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)COLEC12  -     18p11.32   [Description]    (hg38-Dec_2013)
EnsemblCOLEC12 - 18p11.32 [CytoView hg19]  COLEC12 - 18p11.32 [CytoView hg38]
Mapping of homologs : NCBICOLEC12 [Mapview hg19]  COLEC12 [Mapview hg38]
OMIM607621   
Gene and transcription
Genbank (Entrez)AA903451 AB005145 AB034251 AB038518 AB052103
RefSeq transcript (Entrez)NM_030781 NM_130386
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_030342 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)COLEC12
Cluster EST : UnigeneHs.464422 [ NCBI ]
CGAP (NCI)Hs.464422
Gene ExpressionCOLEC12 [ NCBI-GEO ]   COLEC12 [ EBI - ARRAY_EXPRESS ]   COLEC12 [ SEEK ]   COLEC12 [ MEM ]
Gene Expression Viewer (FireBrowse)COLEC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81035
GTEX Portal (Tissue expression)COLEC12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5KU26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5KU26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5KU26
Splice isoforms : SwissVarQ5KU26
PhosPhoSitePlusQ5KU26
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Collagen   
Domain families : Pfam (Sanger)Collagen (PF01391)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam01391    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)COLEC12
DMDM Disease mutations81035
Blocks (Seattle)COLEC12
PDB (SRS)2OX8   
PDB (PDBSum)2OX8   
PDB (IMB)2OX8   
PDB (RSDB)2OX8   
Structural Biology KnowledgeBase2OX8   
SCOP (Structural Classification of Proteins)2OX8   
CATH (Classification of proteins structures)2OX8   
SuperfamilyQ5KU26
Peptide AtlasQ5KU26
HPRD06358
IPIIPI00414467   IPI00885028   
Protein Interaction databases
DIP (DOE-UCLA)Q5KU26
IntAct (EBI)Q5KU26
BioGRIDCOLEC12
STRING (EMBL)COLEC12
ZODIACCOLEC12
Ontologies - Pathways
QuickGOQ5KU26
Ontology : AmiGOscavenger receptor activity  galactose binding  collagen trimer  plasma membrane  receptor-mediated endocytosis  phagocytosis, recognition  defense response  signaling pattern recognition receptor activity  carbohydrate mediated signaling  integral component of membrane  low-density lipoprotein particle binding  endocytic vesicle membrane  toll-like receptor 3 signaling pathway  innate immune response  metal ion binding  protein homooligomerization  positive regulation of cell adhesion molecule production  extracellular exosome  cellular response to exogenous dsRNA  cellular response to exogenous dsRNA  
Ontology : EGO-EBIscavenger receptor activity  galactose binding  collagen trimer  plasma membrane  receptor-mediated endocytosis  phagocytosis, recognition  defense response  signaling pattern recognition receptor activity  carbohydrate mediated signaling  integral component of membrane  low-density lipoprotein particle binding  endocytic vesicle membrane  toll-like receptor 3 signaling pathway  innate immune response  metal ion binding  protein homooligomerization  positive regulation of cell adhesion molecule production  extracellular exosome  cellular response to exogenous dsRNA  cellular response to exogenous dsRNA  
Pathways : KEGGPhagosome   
NDEx NetworkCOLEC12
Atlas of Cancer Signalling NetworkCOLEC12
Wikipedia pathwaysCOLEC12
Orthology - Evolution
OrthoDB81035
Phylogenetic Trees/Animal Genes : TreeFamCOLEC12
HOVERGENQ5KU26
HOGENOMQ5KU26
Homologs : HomoloGeneCOLEC12
Homology/Alignments : Family Browser (UCSC)COLEC12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOLEC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COLEC12
dbVarCOLEC12
ClinVarCOLEC12
1000_GenomesCOLEC12 
Exome Variant ServerCOLEC12
ExAC (Exome Aggregation Consortium)COLEC12 (select the gene name)
Genetic variants : HAPMAP81035
Genomic Variants (DGV)COLEC12 [DGVbeta]
DECIPHER (Syndromes)18:319355-500729  
CONAN: Copy Number AnalysisCOLEC12 
Mutations
ICGC Data PortalCOLEC12 
TCGA Data PortalCOLEC12 
Broad Tumor PortalCOLEC12
OASIS PortalCOLEC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOLEC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOLEC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COLEC12
DgiDB (Drug Gene Interaction Database)COLEC12
DoCM (Curated mutations)COLEC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COLEC12 (select a term)
intoGenCOLEC12
Cancer3DCOLEC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607621   
Orphanet
MedgenCOLEC12
Genetic Testing Registry COLEC12
NextProtQ5KU26 [Medical]
TSGene81035
GENETestsCOLEC12
Huge Navigator COLEC12 [HugePedia]
snp3D : Map Gene to Disease81035
BioCentury BCIQCOLEC12
ClinGenCOLEC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81035
Chemical/Pharm GKB GenePA26738
Clinical trialCOLEC12
Miscellaneous
canSAR (ICR)COLEC12 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOLEC12
EVEXCOLEC12
GoPubMedCOLEC12
iHOPCOLEC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:01 CET 2017

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