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COMMD10 (COMM domain containing 10)

Identity

Other aliasPTD002
HGNC (Hugo) COMMD10
LocusID (NCBI) 51397
Atlas_Id 57251
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 116084976 and ends at 116293290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COMMD10 (5q23.1) / AP3S1 (5q22.3)COMMD10 (5q23.1) / DGKI (7q33)NREP (5q22.1) / COMMD10 (5q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 5 ]
  t(5;5)(q22;q23) NREP/COMMD10
COMMD10/AP3S1 (5q23)
COMMD10/AP3S1 (5q23)
t(5;5)(q23;q34) ATP10B/COMMD10
t(5;7)(q23;q33) COMMD10/DGKI

External links

Nomenclature
HGNC (Hugo)COMMD10   30201
Cards
Entrez_Gene (NCBI)COMMD10  51397  COMM domain containing 10
AliasesPTD002
GeneCards (Weizmann)COMMD10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:116084976-116293290 [Contig_View]  COMMD10 [Vega]
TCGA cBioPortalCOMMD10
AceView (NCBI)COMMD10
Genatlas (Paris)COMMD10
WikiGenes51397
SOURCE (Princeton)COMMD10
Genetics Home Reference (NIH)COMMD10
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD10  -     chr5:116084976-116293290 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD10  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblCOMMD10 - 5q23.1 [CytoView hg19]  COMMD10 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBICOMMD10 [Mapview hg19]  COMMD10 [Mapview hg38]
OMIM616704   
Gene and transcription
Genbank (Entrez)AF078857 AF161423 AK002147 AW128995 AW662195
RefSeq transcript (Entrez)NM_001308080 NM_016144
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD10
Cluster EST : UnigeneHs.483136 [ NCBI ]
CGAP (NCI)Hs.483136
Gene ExpressionCOMMD10 [ NCBI-GEO ]   COMMD10 [ EBI - ARRAY_EXPRESS ]   COMMD10 [ SEEK ]   COMMD10 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51397
GTEX Portal (Tissue expression)COMMD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6G5
Splice isoforms : SwissVarQ9Y6G5
PhosPhoSitePlusQ9Y6G5
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM    COMMD10   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD10
DMDM Disease mutations51397
Blocks (Seattle)COMMD10
SuperfamilyQ9Y6G5
Peptide AtlasQ9Y6G5
IPIIPI00412811   IPI00968056   IPI00965754   IPI00967239   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6G5
IntAct (EBI)Q9Y6G5
BioGRIDCOMMD10
STRING (EMBL)COMMD10
ZODIACCOMMD10
Ontologies - Pathways
QuickGOQ9Y6G5
Ontology : AmiGOprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkCOMMD10
Atlas of Cancer Signalling NetworkCOMMD10
Wikipedia pathwaysCOMMD10
Orthology - Evolution
OrthoDB51397
Phylogenetic Trees/Animal Genes : TreeFamCOMMD10
HOVERGENQ9Y6G5
HOGENOMQ9Y6G5
Homologs : HomoloGeneCOMMD10
Homology/Alignments : Family Browser (UCSC)COMMD10
Gene fusions - Rearrangements
Fusion : QuiverCOMMD10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD10
dbVarCOMMD10
ClinVarCOMMD10
1000_GenomesCOMMD10 
Exome Variant ServerCOMMD10
Varsome BrowserCOMMD10
Genetic variants : HAPMAP51397
Genomic Variants (DGV)COMMD10 [DGVbeta]
DECIPHERCOMMD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD10 
Mutations
ICGC Data PortalCOMMD10 
TCGA Data PortalCOMMD10 
Broad Tumor PortalCOMMD10
OASIS PortalCOMMD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD10
DgiDB (Drug Gene Interaction Database)COMMD10
DoCM (Curated mutations)COMMD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD10 (select a term)
intoGenCOMMD10
Cancer3DCOMMD10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616704   
Orphanet
DisGeNETCOMMD10
MedgenCOMMD10
Genetic Testing Registry COMMD10
NextProtQ9Y6G5 [Medical]
TSGene51397
GENETestsCOMMD10
Target ValidationCOMMD10
Huge Navigator COMMD10 [HugePedia]
snp3D : Map Gene to Disease51397
BioCentury BCIQCOMMD10
ClinGenCOMMD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51397
Chemical/Pharm GKB GenePA134862606
Clinical trialCOMMD10
Miscellaneous
canSAR (ICR)COMMD10 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD10
EVEXCOMMD10
GoPubMedCOMMD10
iHOPCOMMD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:16:36 CEST 2018
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