Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

COMMD2 (COMM domain containing 2)

Identity

Alias_symbol (synonym)HSPC042
Other alias
HGNC (Hugo) COMMD2
LocusID (NCBI) 51122
Atlas_Id 62012
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149738470 and ends at 149752499 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf48 (6p21.33) / COMMD2 (3q25.1)COMMD2 (3q25.1) / POFUT1 (20q11.21)MDM2 (12q15) / COMMD2 (3q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD2   24993
Cards
Entrez_Gene (NCBI)COMMD2  51122  COMM domain containing 2
AliasesHSPC042
GeneCards (Weizmann)COMMD2
Ensembl hg19 (Hinxton)ENSG00000114744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114744 [Gene_View]  chr3:149738470-149752499 [Contig_View]  COMMD2 [Vega]
ICGC DataPortalENSG00000114744
TCGA cBioPortalCOMMD2
AceView (NCBI)COMMD2
Genatlas (Paris)COMMD2
WikiGenes51122
SOURCE (Princeton)COMMD2
Genetics Home Reference (NIH)COMMD2
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD2  -     chr3:149738470-149752499 -  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD2  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblCOMMD2 - 3q25.1 [CytoView hg19]  COMMD2 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBICOMMD2 [Mapview hg19]  COMMD2 [Mapview hg38]
OMIM616699   
Gene and transcription
Genbank (Entrez)AF059618 AF125096 AK055223 AY542158 BC001228
RefSeq transcript (Entrez)NM_016094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD2
Cluster EST : UnigeneHs.432729 [ NCBI ]
CGAP (NCI)Hs.432729
Alternative Splicing GalleryENSG00000114744
Gene ExpressionCOMMD2 [ NCBI-GEO ]   COMMD2 [ EBI - ARRAY_EXPRESS ]   COMMD2 [ SEEK ]   COMMD2 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51122
GTEX Portal (Tissue expression)COMMD2
Human Protein AtlasENSG00000114744-COMMD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X83
Splice isoforms : SwissVarQ86X83
PhosPhoSitePlusQ86X83
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD2
DMDM Disease mutations51122
Blocks (Seattle)COMMD2
SuperfamilyQ86X83
Human Protein Atlas [tissue]ENSG00000114744-COMMD2 [tissue]
Peptide AtlasQ86X83
HPRD13081
IPIIPI00456048   IPI00791916   IPI00946749   
Protein Interaction databases
DIP (DOE-UCLA)Q86X83
IntAct (EBI)Q86X83
FunCoupENSG00000114744
BioGRIDCOMMD2
STRING (EMBL)COMMD2
ZODIACCOMMD2
Ontologies - Pathways
QuickGOQ86X83
Ontology : AmiGOprotein binding  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkCOMMD2
Atlas of Cancer Signalling NetworkCOMMD2
Wikipedia pathwaysCOMMD2
Orthology - Evolution
OrthoDB51122
GeneTree (enSembl)ENSG00000114744
Phylogenetic Trees/Animal Genes : TreeFamCOMMD2
HOVERGENQ86X83
HOGENOMQ86X83
Homologs : HomoloGeneCOMMD2
Homology/Alignments : Family Browser (UCSC)COMMD2
Gene fusions - Rearrangements
Fusion: Tumor Portal COMMD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD2
dbVarCOMMD2
ClinVarCOMMD2
1000_GenomesCOMMD2 
Exome Variant ServerCOMMD2
ExAC (Exome Aggregation Consortium)ENSG00000114744
GNOMAD BrowserENSG00000114744
Genetic variants : HAPMAP51122
Genomic Variants (DGV)COMMD2 [DGVbeta]
DECIPHERCOMMD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD2 
Mutations
ICGC Data PortalCOMMD2 
TCGA Data PortalCOMMD2 
Broad Tumor PortalCOMMD2
OASIS PortalCOMMD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD2
DgiDB (Drug Gene Interaction Database)COMMD2
DoCM (Curated mutations)COMMD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD2 (select a term)
intoGenCOMMD2
Cancer3DCOMMD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616699   
Orphanet
MedgenCOMMD2
Genetic Testing Registry COMMD2
NextProtQ86X83 [Medical]
TSGene51122
GENETestsCOMMD2
Target ValidationCOMMD2
Huge Navigator COMMD2 [HugePedia]
snp3D : Map Gene to Disease51122
BioCentury BCIQCOMMD2
ClinGenCOMMD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51122
Chemical/Pharm GKB GenePA134923363
Clinical trialCOMMD2
Miscellaneous
canSAR (ICR)COMMD2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD2
EVEXCOMMD2
GoPubMedCOMMD2
iHOPCOMMD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:43:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.