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COMMD3 (COMM domain containing 3)

Identity

Alias_namesC10orf8
chromosome 10 open reading frame 8
Alias_symbol (synonym)BUP
Other alias
HGNC (Hugo) COMMD3
LocusID (NCBI) 23412
Atlas_Id 62013
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 22316383 and ends at 22320317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COMMD3 (10p12.2) / BMI1 (10p12.2)RHAG (6p12.3) / COMMD3 (10p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD3   23332
Cards
Entrez_Gene (NCBI)COMMD3  23412  COMM domain containing 3
AliasesBUP; C10orf8
GeneCards (Weizmann)COMMD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:22316383-22320317 [Contig_View]  COMMD3 [Vega]
TCGA cBioPortalCOMMD3
AceView (NCBI)COMMD3
Genatlas (Paris)COMMD3
WikiGenes23412
SOURCE (Princeton)COMMD3
Genetics Home Reference (NIH)COMMD3
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD3  -     chr10:22316383-22320317 +  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD3  -     10p12.2   [Description]    (hg19-Feb_2009)
EnsemblCOMMD3 - 10p12.2 [CytoView hg19]  COMMD3 - 10p12.2 [CytoView hg38]
Mapping of homologs : NCBICOMMD3 [Mapview hg19]  COMMD3 [Mapview hg38]
OMIM616700   
Gene and transcription
Genbank (Entrez)AF078848 AF201948 AK128789 AW169042 AY542159
RefSeq transcript (Entrez)NM_012071
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD3
Cluster EST : UnigeneHs.534398 [ NCBI ]
CGAP (NCI)Hs.534398
Gene ExpressionCOMMD3 [ NCBI-GEO ]   COMMD3 [ EBI - ARRAY_EXPRESS ]   COMMD3 [ SEEK ]   COMMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23412
GTEX Portal (Tissue expression)COMMD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBI1
Splice isoforms : SwissVarQ9UBI1
PhosPhoSitePlusQ9UBI1
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD3
DMDM Disease mutations23412
Blocks (Seattle)COMMD3
SuperfamilyQ9UBI1
Peptide AtlasQ9UBI1
HPRD13082
IPIIPI00015773   IPI00903231   IPI00514949   IPI00514459   IPI00515123   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBI1
IntAct (EBI)Q9UBI1
BioGRIDCOMMD3
STRING (EMBL)COMMD3
ZODIACCOMMD3
Ontologies - Pathways
QuickGOQ9UBI1
Ontology : AmiGOprotein binding  extracellular region  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sodium ion transport  neutrophil degranulation  ficolin-1-rich granule lumen  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sodium ion transport  neutrophil degranulation  ficolin-1-rich granule lumen  
NDEx NetworkCOMMD3
Atlas of Cancer Signalling NetworkCOMMD3
Wikipedia pathwaysCOMMD3
Orthology - Evolution
OrthoDB23412
Phylogenetic Trees/Animal Genes : TreeFamCOMMD3
HOVERGENQ9UBI1
HOGENOMQ9UBI1
Homologs : HomoloGeneCOMMD3
Homology/Alignments : Family Browser (UCSC)COMMD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD3
dbVarCOMMD3
ClinVarCOMMD3
1000_GenomesCOMMD3 
Exome Variant ServerCOMMD3
ExAC (Exome Aggregation Consortium)COMMD3 (select the gene name)
Genetic variants : HAPMAP23412
Genomic Variants (DGV)COMMD3 [DGVbeta]
DECIPHERCOMMD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD3 
Mutations
ICGC Data PortalCOMMD3 
TCGA Data PortalCOMMD3 
Broad Tumor PortalCOMMD3
OASIS PortalCOMMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD3
DgiDB (Drug Gene Interaction Database)COMMD3
DoCM (Curated mutations)COMMD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD3 (select a term)
intoGenCOMMD3
Cancer3DCOMMD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616700   
Orphanet
MedgenCOMMD3
Genetic Testing Registry COMMD3
NextProtQ9UBI1 [Medical]
TSGene23412
GENETestsCOMMD3
Target ValidationCOMMD3
Huge Navigator COMMD3 [HugePedia]
snp3D : Map Gene to Disease23412
BioCentury BCIQCOMMD3
ClinGenCOMMD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23412
Chemical/Pharm GKB GenePA134864927
Clinical trialCOMMD3
Miscellaneous
canSAR (ICR)COMMD3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD3
EVEXCOMMD3
GoPubMedCOMMD3
iHOPCOMMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:16 CEST 2017

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