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COMMD3 (COMM domain containing 3)

Identity

Alias (NCBI)BUP
C10orf8
HGNC (Hugo) COMMD3
HGNC Alias symbBUP
HGNC Previous nameC10orf8
HGNC Previous namechromosome 10 open reading frame 8
LocusID (NCBI) 23412
Atlas_Id 62013
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 22316388 and ends at 22320305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COMMD3 (10p12.2) / BMI1 (10p12.2)RHAG (6p12.3) / COMMD3 (10p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)COMMD3   23332
Cards
Entrez_Gene (NCBI)COMMD3    COMM domain containing 3
AliasesBUP; C10orf8
GeneCards (Weizmann)COMMD3
Ensembl hg19 (Hinxton)ENSG00000148444 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148444 [Gene_View]  ENSG00000148444 [Sequence]  chr10:22316388-22320305 [Contig_View]  COMMD3 [Vega]
ICGC DataPortalENSG00000148444
TCGA cBioPortalCOMMD3
AceView (NCBI)COMMD3
Genatlas (Paris)COMMD3
SOURCE (Princeton)COMMD3
Genetics Home Reference (NIH)COMMD3
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD3  -     chr10:22316388-22320305 +  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD3  -     10p12.2   [Description]    (hg19-Feb_2009)
GoldenPathCOMMD3 - 10p12.2 [CytoView hg19]  COMMD3 - 10p12.2 [CytoView hg38]
ImmunoBaseENSG00000148444
Genome Data Viewer NCBICOMMD3 [Mapview hg19]  
OMIM616700   
Gene and transcription
Genbank (Entrez)AF078848 AF201948 AK128789 AW169042 AY542159
RefSeq transcript (Entrez)NM_012071
Consensus coding sequences : CCDS (NCBI)COMMD3
Gene ExpressionCOMMD3 [ NCBI-GEO ]   COMMD3 [ EBI - ARRAY_EXPRESS ]   COMMD3 [ SEEK ]   COMMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD3 [ Firebrowse - Broad ]
GenevisibleExpression of COMMD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23412
GTEX Portal (Tissue expression)COMMD3
Human Protein AtlasENSG00000148444-COMMD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBI1
PhosPhoSitePlusQ9UBI1
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM    COMMD3   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD3
SuperfamilyQ9UBI1
AlphaFold pdb e-kbQ9UBI1   
Human Protein Atlas [tissue]ENSG00000148444-COMMD3 [tissue]
HPRD13082
Protein Interaction databases
DIP (DOE-UCLA)Q9UBI1
IntAct (EBI)Q9UBI1
BioGRIDCOMMD3
STRING (EMBL)COMMD3
ZODIACCOMMD3
Ontologies - Pathways
QuickGOQ9UBI1
Ontology : AmiGOprotein binding  extracellular region  nucleus  sodium ion transport  neutrophil degranulation  ficolin-1-rich granule lumen  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  sodium ion transport  neutrophil degranulation  ficolin-1-rich granule lumen  
NDEx NetworkCOMMD3
Atlas of Cancer Signalling NetworkCOMMD3
Wikipedia pathwaysCOMMD3
Orthology - Evolution
OrthoDB23412
GeneTree (enSembl)ENSG00000148444
Phylogenetic Trees/Animal Genes : TreeFamCOMMD3
Homologs : HomoloGeneCOMMD3
Homology/Alignments : Family Browser (UCSC)COMMD3
Gene fusions - Rearrangements
Fusion : QuiverCOMMD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD3
dbVarCOMMD3
ClinVarCOMMD3
MonarchCOMMD3
1000_GenomesCOMMD3 
Exome Variant ServerCOMMD3
GNOMAD BrowserENSG00000148444
Varsome BrowserCOMMD3
ACMGCOMMD3 variants
VarityQ9UBI1
Genomic Variants (DGV)COMMD3 [DGVbeta]
DECIPHERCOMMD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD3 
Mutations
ICGC Data PortalCOMMD3 
TCGA Data PortalCOMMD3 
Broad Tumor PortalCOMMD3
OASIS PortalCOMMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCOMMD3
Mutations and Diseases : HGMDCOMMD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCOMMD3
DgiDB (Drug Gene Interaction Database)COMMD3
DoCM (Curated mutations)COMMD3
CIViC (Clinical Interpretations of Variants in Cancer)COMMD3
Cancer3DCOMMD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616700   
Orphanet
DisGeNETCOMMD3
MedgenCOMMD3
Genetic Testing Registry COMMD3
NextProtQ9UBI1 [Medical]
GENETestsCOMMD3
Target ValidationCOMMD3
Huge Navigator COMMD3 [HugePedia]
ClinGenCOMMD3
Clinical trials, drugs, therapy
MyCancerGenomeCOMMD3
Protein Interactions : CTDCOMMD3
Pharm GKB GenePA134864927
PharosQ9UBI1
Clinical trialCOMMD3
Miscellaneous
canSAR (ICR)COMMD3
HarmonizomeCOMMD3
DataMed IndexCOMMD3
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCOMMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:46:36 CEST 2021

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