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COMMD4 (COMM domain containing 4)

Identity

Alias_symbol (synonym)FLJ20452
Other alias-
HGNC (Hugo) COMMD4
LocusID (NCBI) 54939
Atlas_Id 62015
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75335996 and ends at 75340277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COMMD4 (15q24.2) / COMMD4 (15q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD4   26027
Cards
Entrez_Gene (NCBI)COMMD4  54939  COMM domain containing 4
Aliases
GeneCards (Weizmann)COMMD4
Ensembl hg19 (Hinxton)ENSG00000140365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140365 [Gene_View]  chr15:75335996-75340277 [Contig_View]  COMMD4 [Vega]
ICGC DataPortalENSG00000140365
TCGA cBioPortalCOMMD4
AceView (NCBI)COMMD4
Genatlas (Paris)COMMD4
WikiGenes54939
SOURCE (Princeton)COMMD4
Genetics Home Reference (NIH)COMMD4
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD4  -     chr15:75335996-75340277 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD4  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblCOMMD4 - 15q24.2 [CytoView hg19]  COMMD4 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBICOMMD4 [Mapview hg19]  COMMD4 [Mapview hg38]
OMIM616701   
Gene and transcription
Genbank (Entrez)AK000459 AK057145 AK225716 AK293708 AK314740
RefSeq transcript (Entrez)NM_001284377 NM_001284378 NM_001284379 NM_001321844 NM_001321845 NM_001321846 NM_001321847 NM_001321848 NM_017828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD4
Cluster EST : UnigeneHs.351327 [ NCBI ]
CGAP (NCI)Hs.351327
Alternative Splicing GalleryENSG00000140365
Gene ExpressionCOMMD4 [ NCBI-GEO ]   COMMD4 [ EBI - ARRAY_EXPRESS ]   COMMD4 [ SEEK ]   COMMD4 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54939
GTEX Portal (Tissue expression)COMMD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0A8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0A8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0A8
Splice isoforms : SwissVarQ9H0A8
PhosPhoSitePlusQ9H0A8
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD4
DMDM Disease mutations54939
Blocks (Seattle)COMMD4
SuperfamilyQ9H0A8
Human Protein AtlasENSG00000140365
Peptide AtlasQ9H0A8
HPRD13083
IPIIPI00413500   IPI00456702   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0A8
IntAct (EBI)Q9H0A8
FunCoupENSG00000140365
BioGRIDCOMMD4
STRING (EMBL)COMMD4
ZODIACCOMMD4
Ontologies - Pathways
QuickGOQ9H0A8
Ontology : AmiGOprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkCOMMD4
Atlas of Cancer Signalling NetworkCOMMD4
Wikipedia pathwaysCOMMD4
Orthology - Evolution
OrthoDB54939
GeneTree (enSembl)ENSG00000140365
Phylogenetic Trees/Animal Genes : TreeFamCOMMD4
HOVERGENQ9H0A8
HOGENOMQ9H0A8
Homologs : HomoloGeneCOMMD4
Homology/Alignments : Family Browser (UCSC)COMMD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD4
dbVarCOMMD4
ClinVarCOMMD4
1000_GenomesCOMMD4 
Exome Variant ServerCOMMD4
ExAC (Exome Aggregation Consortium)COMMD4 (select the gene name)
Genetic variants : HAPMAP54939
Genomic Variants (DGV)COMMD4 [DGVbeta]
DECIPHERCOMMD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD4 
Mutations
ICGC Data PortalCOMMD4 
TCGA Data PortalCOMMD4 
Broad Tumor PortalCOMMD4
OASIS PortalCOMMD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD4
DgiDB (Drug Gene Interaction Database)COMMD4
DoCM (Curated mutations)COMMD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD4 (select a term)
intoGenCOMMD4
Cancer3DCOMMD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616701   
Orphanet
MedgenCOMMD4
Genetic Testing Registry COMMD4
NextProtQ9H0A8 [Medical]
TSGene54939
GENETestsCOMMD4
Target ValidationCOMMD4
Huge Navigator COMMD4 [HugePedia]
snp3D : Map Gene to Disease54939
BioCentury BCIQCOMMD4
ClinGenCOMMD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54939
Chemical/Pharm GKB GenePA134993083
Clinical trialCOMMD4
Miscellaneous
canSAR (ICR)COMMD4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD4
EVEXCOMMD4
GoPubMedCOMMD4
iHOPCOMMD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:12 CEST 2017

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