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COMMD5 (COMM domain containing 5)

Identity

Alias_symbol (synonym)HT002
FLJ13008
HCaRG
Other aliasHCARG
HGNC (Hugo) COMMD5
LocusID (NCBI) 28991
Atlas_Id 50611
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144850166 and ends at 144853578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COMMD5 (8q24.3) / SEPT8 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)COMMD5   17902
Cards
Entrez_Gene (NCBI)COMMD5  28991  COMM domain containing 5
AliasesHCARG; HT002
GeneCards (Weizmann)COMMD5
Ensembl hg19 (Hinxton)ENSG00000170619 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170619 [Gene_View]  chr8:144850166-144853578 [Contig_View]  COMMD5 [Vega]
ICGC DataPortalENSG00000170619
TCGA cBioPortalCOMMD5
AceView (NCBI)COMMD5
Genatlas (Paris)COMMD5
WikiGenes28991
SOURCE (Princeton)COMMD5
Genetics Home Reference (NIH)COMMD5
Genomic and cartography
GoldenPath hg38 (UCSC)COMMD5  -     chr8:144850166-144853578 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)COMMD5  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblCOMMD5 - 8q24.3 [CytoView hg19]  COMMD5 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBICOMMD5 [Mapview hg19]  COMMD5 [Mapview hg38]
OMIM608216   
Gene and transcription
Genbank (Entrez)AF113540 AF290195 AK001477 AK023070 AK092477
RefSeq transcript (Entrez)NM_001081003 NM_001081004 NM_001287237 NM_014066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)COMMD5
Cluster EST : UnigeneHs.631856 [ NCBI ]
CGAP (NCI)Hs.631856
Alternative Splicing GalleryENSG00000170619
Gene ExpressionCOMMD5 [ NCBI-GEO ]   COMMD5 [ EBI - ARRAY_EXPRESS ]   COMMD5 [ SEEK ]   COMMD5 [ MEM ]
Gene Expression Viewer (FireBrowse)COMMD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28991
GTEX Portal (Tissue expression)COMMD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZQ3
Splice isoforms : SwissVarQ9GZQ3
PhosPhoSitePlusQ9GZQ3
Domaine pattern : Prosite (Expaxy)COMM (PS51269)   
Domains : Interpro (EBI)COMM   
Domain families : Pfam (Sanger)COMM_domain (PF07258)   
Domain families : Pfam (NCBI)pfam07258   
Conserved Domain (NCBI)COMMD5
DMDM Disease mutations28991
Blocks (Seattle)COMMD5
SuperfamilyQ9GZQ3
Human Protein AtlasENSG00000170619
Peptide AtlasQ9GZQ3
HPRD16301
IPIIPI00101106   IPI00983291   IPI00984566   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZQ3
IntAct (EBI)Q9GZQ3
FunCoupENSG00000170619
BioGRIDCOMMD5
STRING (EMBL)COMMD5
ZODIACCOMMD5
Ontologies - Pathways
QuickGOQ9GZQ3
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkCOMMD5
Atlas of Cancer Signalling NetworkCOMMD5
Wikipedia pathwaysCOMMD5
Orthology - Evolution
OrthoDB28991
GeneTree (enSembl)ENSG00000170619
Phylogenetic Trees/Animal Genes : TreeFamCOMMD5
HOVERGENQ9GZQ3
HOGENOMQ9GZQ3
Homologs : HomoloGeneCOMMD5
Homology/Alignments : Family Browser (UCSC)COMMD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCOMMD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)COMMD5
dbVarCOMMD5
ClinVarCOMMD5
1000_GenomesCOMMD5 
Exome Variant ServerCOMMD5
ExAC (Exome Aggregation Consortium)COMMD5 (select the gene name)
Genetic variants : HAPMAP28991
Genomic Variants (DGV)COMMD5 [DGVbeta]
DECIPHERCOMMD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCOMMD5 
Mutations
ICGC Data PortalCOMMD5 
TCGA Data PortalCOMMD5 
Broad Tumor PortalCOMMD5
OASIS PortalCOMMD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCOMMD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCOMMD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch COMMD5
DgiDB (Drug Gene Interaction Database)COMMD5
DoCM (Curated mutations)COMMD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)COMMD5 (select a term)
intoGenCOMMD5
Cancer3DCOMMD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608216   
Orphanet
MedgenCOMMD5
Genetic Testing Registry COMMD5
NextProtQ9GZQ3 [Medical]
TSGene28991
GENETestsCOMMD5
Target ValidationCOMMD5
Huge Navigator COMMD5 [HugePedia]
snp3D : Map Gene to Disease28991
BioCentury BCIQCOMMD5
ClinGenCOMMD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28991
Chemical/Pharm GKB GenePA134873412
Clinical trialCOMMD5
Miscellaneous
canSAR (ICR)COMMD5 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCOMMD5
EVEXCOMMD5
GoPubMedCOMMD5
iHOPCOMMD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:19 CEST 2017

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